Research Article

Investigating hsp Gene Expression in Liver of Channa striatus under Heat Stress for Understanding the Upper Thermal Acclimation

Table 1

Primer sets used for semiquantitative RT-PCR and quantitative RT-PCR analysis of hsp genes in Channa striatus.

Primer name Primer sequence (5′-3′) Annealing temperatureAmplicon size (bp)

Semiquantitative RT-PCR
hsp70 F: 5′-GCATGGTGAACCACTTTGTG-3′53°C 368
R: 5′-CTCTGCCGTTGAAGAAATCC-3′
hsp78 F: 5′-TCCAGGCTACCCTGATTTTG-3′60°C 360
R: 5′-CACCATGCCTACATCCTCCT-3′
hsp60 F: 5′-C(C/T)G TCA CCATGG G(A/G/T)C CAA AGG-3′65°C 648
R: 5′-(C/G/T)GC CTC TCC ATC CAC ATC C/T)TC(A/C)GC-3′
hsp90 F: 5′-GGAAATCTTCCTCCGAGAGC-3′51°C 244
R: 5′-CCGAATTGACCGATCATAGA-3′
hsp110 F: 5′-GCAGATCTCCGCTATGCTGT-3′56°C 242
R: 5′-CGAATGACCCAAGTCCACGA-3′
hsp47 F: 5′-CACTGGGATGAGAAGTTCCA-3′59°C 408
R: 5′-AAGGAAAATGAAGGGATGGTC-3′
hsp27 F: 5′-CTT TGG GAT GCC ACA CTT CT-3′50°C 233
R: 5′-ATC TGG CGT CTG CTT GAT CT-3′

Quantitative RT-PCR
hsp70 F: 5′-GTC GTG GATCTGTCCCTTGT-3′57°C 98
R: 5′-CTCGCTTTGAGGAGCTGTG-3′
hsp78 F: 5′-GTC TTG GTG GGT GGC TCT AC-3′57°C 94
R: 5′-TCA GGG TTG ATG CCC CTA GA-3′
hsp60 F: 5′-TCG CAC TGT CAT CAT TGA GC-3′61°C 91
R: 5′-CTT GTC TTT CAG GTC GAT GG-3′
hsp90 F: 5′-CTG GGG TCT GTC AAG CTT TC-3′60°C 122
R: 5′-AGG CCT TGG ACA AAA TCA GA-3′
hsp110 F: 5′-AAG CTG GAG GGC TCC TAT CA-3′53°C90
R: 5′-ATA CAG CCA GTT CTC CGT GC-3′
hsp47 F: 5′-CTG ACA GAG GCT GTG GAC AA-3′52°C60
R: 5′-GTC CTT CTT CCC GGA GAT GT-3′
hsp27 F: 5′-TGG GAT GCC ACA CTT CTC CG-3′59°C70
R: 5′-GAT GTA TCC AGG CCA GTG CG-3′

F, forward; R, reverse.