miRSeq: A User-Friendly Standalone Toolkit for Sequencing Quality Evaluation and miRNA Profiling

<table class="table-group" id="tab5"><tr><td><table class="table"><tr><td class="thead-hr" colspan="5"><hr/></td></tr><tr class="thead"><td align="left">OS</td><td align="center">CPU</td><td align="center">Memory</td><td align="center">readPro</td><td align="center">readMap</td></tr><tr><td class="thead-hr" colspan="5"><hr/></td></tr><tr><td align="left">32 bit Win. XP</td><td align="center">Intel Pentium 4, 3.0 GHz</td><td align="center">1.0 GB</td><td align="center">6 min.</td><td align="center">40 min.</td></tr><tr><td align="left">32 bit Win. XP</td><td align="center">Intel Atom D525, 1.0 GHz </td><td align="center">3.0 GB</td><td align="center">12 min.</td><td align="center">52 min.</td></tr><tr><td align="left">64 bit Win. 7</td><td align="center">Intel Core i5, 1.7 GHz</td><td align="center">4.0 GB</td><td align="center">5 min.</td><td align="center">4 min.</td></tr><tr><td align="left">64 bit Win. Server 2008</td><td align="center">Intel Xeon E5-2620, 2.0 GHz</td><td align="center">16.0 GB</td><td align="center">5 min.</td><td align="center">7 min.</td></tr><tr class="table-tr"><td colspan="5"><hr class="tbody-hr"/></td></tr></table></td></tr></table>

The time needed for a miRSeq alignment. Input data: L1 small RNA NGS data, totally 11,229,160 reads and accounting for approximately 1.7 GB disk space.

BioMed Research International

tab5

Table 5

Table 5: miRSeq: A User-Friendly Standalone Toolkit for Sequencing Quality Evaluation and miRNA Profiling 