FSim: A Novel Functional Similarity Search Algorithm and Tool for Discovering Functionally Related Gene Products
The two exemplary visualization plots provided by FSim package. The heat map in (a) displays whether the genes are annotated to a given group of GO terms. A total of 10 genes and 4 GO terms are displayed in this heat map. The -axis is the Entrez gene ID, and the -axis is the GO term ID. The squares in the map denote whether a gene is annotated with a corresponding GO term, with the color proportional to the LC scores. The word cloud in (b) displays all overrepresented GO terms for a given pathway. The GO terms are listed with different text scales and colors corresponding to their respective enriched weights.