BLAT-Based Comparative Analysis for Transposable Elements: BLATCAT
Table 4
The result of RepeatMasker within BLATCAT.
SW
perc
perc
perc
query
position in query
Matching repeat
Position in repeat
ID
Score
Div.
Del.
Ins.
Sequence
Begin
End
(Left)
Repeat
Class/family
Begin
End
(Left)
510
28.2
6.4
4.5
Human
10
355
(135)
C
HAL1b
LINE/L1
(406)
2015
1664
5
475
28.7
6.4
4.2
Chimpanzee
10
355
(135)
C
HAL1b
LINE/L1
(405)
2016
1664
1
792
20.5
1.3
0.0
Gorilla
1
151
(460)
+
L1MC1
LINE/L1
6176
6328
(5)
3
402
29.3
7.3
4.8
Gorilla
133
476
(135)
C
HAL1b
LINE/L1
(406)
2015
1664
4*
478
28.6
6.7
4.8
Orangutan
10
355
(135)
C
HAL1b
LINE/L1
(406)
2015
1664
6
465
29.1
6.6
4.3
Gibbon
11
373
(116)
C
HAL1b
LINE/L1
(406)
2015
1645
2
319
32.7
6.6
2.1
Rhesus
24
342
(135)
C
HAL1b
LINE/L1
(425)
1996
1664
7
The RepeatMasker output is displayed. Descriptions of the attributes can be found in Table 1.
*indicates that there is a higher-scoring match whose domain partly (<80%) includes the domain of this match [8].
