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BioMed Research International
Volume 2014, Article ID 736473, 16 pages
Research Article

A De Novo Genome Assembly Algorithm for Repeats and Nonrepeats

1School of Information Science and Technology, Sun Yat-Sen University, Guangzhou High Education Mega City, No. 132 Waihuan East Road, Panyu District, GuangZhou 510006, China
2SYSU-CMU Shunde International Joint Research Institute, Shunde 528300, China

Received 19 December 2013; Revised 1 April 2014; Accepted 8 April 2014; Published 25 May 2014

Academic Editor: Li-Ching Wu

Copyright © 2014 Shuaibin Lian et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

The supplementary materials include three parts: the first part is the performances of SWA in two species with extremly different CG contents presented in S-Table 1 and S-Table 2. These two species contained completely differnet CG contents. The results indicated that CG contents has little influences on the performances of SWA; the seconde part is the detailed generation process of three real simulated sequences in MATLAB platform; and the final part is the Appendix which contains the copy number information presented in Table 1-Table 6 and S-Table 1.

  1. Supplementary Material