Supervised Clustering Based on DPClusO: Prediction of Plant-Disease Relations Using Jamu Formulas of KNApSAcK Database

Table 4

List of plants assigned to each disease.

Number	Plants  name	Hit-miss  status
A.  Disease:  blood  and  lymph diseases
1	Tamarindus  indica	Hit	*
2	Allium  sativum	Hit	*
3	Tinospora  tuberculata	Hit	*
4	Piper  retrofractum	Hit
5	Syzygium  aromaticum	Hit	*
6	Bupleurum  falcatum	Hit
7	Graptophyllum  pictum	Hit
8	Plantago  major	Hit
9	Zingiber  officinale	Hit	*
10	Cinnamomum   burmannii	Hit	*
11	Soya  max	Miss	*
12	Kaempferia  galanga	Hit
13	Curcuma  longa	Hit	*
14	Piper  nigrum	Hit
15	Zingiber  aromaticum	Hit	*
16	Phyllanthus  urinaria	Hit	*
17	Oryza  sativa	Hit
18	Myristica  fragrans	Hit	*
19	Alstonia  scholaris	Hit	*
20	Syzygium  polyanthum	Miss
21	Andrographis  paniculata	Hit	*
22	Sida  rhombifolia	Miss
23	Cyperus  rotundus	Hit
24	Sonchus  arvensis	Miss
25	Curcuma  aeruginosa	Hit	*
26	Curcuma  xanthorrhiza	Hit
B.  Disease:  cancers
1	Catharanthus  roseus	Hit
C.  Disease:  the  digestive  system
1	Foeniculum  vulgare	Hit
2	Glycyrrhiza  uralensis	Hit	*
3	Imperata  cylindrica	Hit
4	Zingiber  purpureum	Hit	*
5	Physalis  peruviana	Hit
6	Punica  granatum	Hit	*
7	Echinacea  purpurea	Hit
8	Zingiber  officinale	Hit	*
9	Psidium  guajava	Hit
10	Baeckea  frutescens	Hit	*
11	Amomum  compactum	Hit
12	Cinnamomum  burmannii	Hit	*
13	Melaleuca  leucadendra	Hit
14	Caesalpinia  sappan	Hit	*
15	Parkia  roxburghii	Hit
16	Rheum  tanguticum	Hit
17	Kaempferia  galanga	Hit
18	Coriandrum  sativum	Hit
19	Curcuma  longa	Hit
20	Zingiber  aromaticum	Hit
21	Phyllanthus  urinaria	Hit
22	Myristica  fragrans	Hit
23	Hydrocotyle  asiatica	Hit	*
24	Carica  papaya	Hit
25	Mentha  arvensis	Hit
26	Lepiniopsis  ternatensis	Hit
27	Helicteres  isora	Hit
28	Andrographis  paniculata	Hit
29	Symplocos  odoratissima	Hit
30	Schisandra  chinensis	Hit
31	Blumea  balsamifera	Hit
32	Silybum  marianum	Hit	*
33	Cinnamomum   sintoc	Hit
34	Elephantopus  scaber	Hit
35	Curcuma  aeruginosa	Hit
36	Kaempferia  pandurata	Hit
37	Curcuma  xanthorrhiza	Hit
38	Curcuma  mangga	Hit	*
39	Curcuma  zedoaria	Hit
40	Daucus  carota	Hit	*
41	Matricaria  chamomilla	Hit	*
42	Cymbopogon  nardus	Hit	*
D.  Disease:  female-specific  diseases
1	Foeniculum  vulgare	Hit
2	Imperata  cylindrica	Hit
3	Tamarindus  indica	Hit
4	Pluchea  indica	Hit	*
5	Piper  retrofractum	Hit
6	Punica  granatum	Hit
7	Uncaria  rhynchophylla	Hit
8	Zingiber  officinale	Hit
9	Guazuma  ulmifolia	Hit	*
10	Nigella  sativa	Hit
11	Terminalia  bellirica	Hit
12	Baeckea  frutescens	Hit
13	Phaseolus  radiatus	Hit
14	Amomum  compactum	Hit	*
15	Sauropus  androgynus	Hit
16	Usnea  misaminensis	Hit
17	Cinnamomum   burmannii	Hit
18	Melaleuca  leucadendra	Hit
19	Parameria  laevigata	Hit
20	Parkia  roxburghii	Hit
21	Piper  cubeba	Hit
22	Kaempferia  galanga	Hit
23	Coriandrum  sativum	Hit
24	Kaempferia  angustifolia	Hit
25	Curcuma  longa	Hit
26	Zingiber  aromaticum	Hit
27	Languas  galanga	Hit
28	Galla  lusitania	Hit
29	Quercus  lusitanica	Hit
30	Hydrocotyle  asiatica	Hit
31	Areca  catechu	Hit
32	Lepiniopsis  ternatensis	Hit
33	Helicteres  isora	Hit	*
34	Piper  betle	Hit
35	Elephantopus  scaber	Hit	*
36	Kaempferia  pandurata	Hit
37	Curcuma  xanthorrhiza	Hit
38	Sesbania  grandiflora	Hit
E.  Disease:  the  heart  and  blood  vessels
1	Allium  sativum	Hit
2	Curcuma  longa	Hit	*
3	Morinda  citrifolia	Hit	*
4	Homalomena  occulta	Hit	*
5	Hydrocotyle  asiatica	Hit
6	Alstonia  scholaris	Hit	*
7	Syzygium  polyanthum	Miss	*
8	Andrographis  paniculata	Hit	*
9	Apium  graveolens	Miss
10	Imperata  cylindrica	Hit
F.  Disease:  male-specific  diseases
1	Cucurbita  pepo	Miss
2	Serenoa  repens	Miss
3	Baeckea  frutescens	Hit
4	Phaseolus  radiatus	Hit
5	Curcuma  longa	Hit
6	Elephantopus  scaber	Hit
G.  Disease:  muscle  and  bone
1	Foeniculum  vulgare	Hit
2	Clausena  anisum-olens	Hit	*
3	Zingiber  purpureum	Hit
4	Allium  sativum	Hit
5	Strychnos  ligustrina	Hit
6	Tinospora  tuberculata	Hit	*
7	Piper  retrofractum	Hit
8	Syzygium  aromaticum	Hit
9	Cola  nitida	Hit	*
10	Ginkgo  biloba	Hit	*
11	Panax  ginseng	Hit
12	Equisetum  debile	Hit	*
13	Zingiber  officinale	Hit
14	Ganoderma  lucidum	Hit
15	Nigella  sativa	Hit
16	Terminalia  bellirica	Hit	*
17	Baeckea  frutescens	Hit	*
18	Amomum  compactum	Hit
19	Cinnamomum   burmannii	Hit
20	Melaleuca  leucadendra	Hit
21	Parameria  laevigata	Hit	*
22	Psophocarpus  tetragonolobus	Hit	*
23	Parkia  roxburghii	Hit
24	Piper  cubeba	Hit	*
25	Kaempferia  galanga	Hit
26	Coriandrum  sativum	Hit
27	Cola  acuminata	Hit
28	Coffea  arabica	Hit
29	Orthosiphon  stamineus	Hit
30	Curcuma  longa	Hit
31	Piper  nigrum	Hit
32	Alpinia  galanga	Hit
33	Vitex  trifolia	Hit
34	Zingiber  amaricans	Hit	*
35	Zingiber  zerumbet	Hit
36	Zingiber  aromaticum	Hit
37	Languas  galanga	Hit
38	Massoia  aromatica	Hit
39	Morinda  citrifolia	Hit
40	Carum  copticum	Hit	*
41	Panax  pseudoginseng	Hit	*
42	Oryza  sativa	Hit
43	Myristica  fragrans	Hit
44	Pandanus  amaryllifolius	Hit
45	Eurycoma  longifolia	Hit
46	Hydrocotyle  asiatica	Hit
47	Areca  catechu	Hit	*
48	Mentha  arvensis	Hit	*
49	Lepiniopsis  ternatensis	Hit
50	Pimpinella  pruatjan	Hit
51	Andrographis  paniculata	Hit
52	Blumea  balsamifera	Hit
53	Cymbopogon  nardus	Hit
54	Sida  rhombifolia	Hit
55	Cinnamomum   sintoc	Hit
56	Piper  betle	Hit	*
57	Talinum  paniculatum	Hit
58	Elephantopus  scaber	Hit
59	Cyperus  rotundus	Hit
60	Curcuma  aeruginosa	Hit
61	Kaempferia  pandurata	Hit	*
62	Curcuma  xanthorrhiza	Hit
63	Tribulus  terrestris	Hit
64	Corydalis  yanhusuo	Hit
65	Pausinystalia  yohimbe	Hit
H.  Disease:  nutritional  and metabolic  diseases
1	Foeniculum  vulgare	Hit
2	Glycyrrhiza  uralensis	Hit
3	Zingiber  purpureum	Hit
4	Allium  sativum	Hit
5	Tinospora  tuberculata	Hit
6	Pandanus  conoideus	Hit
7	Syzygium  aromaticum	Hit
8	Punica  granatum	Hit
9	Zingiber  officinale	Hit
10	Guazuma  ulmifolia	Hit
11	Nigella  sativa	Hit
12	Amomum  compactum	Hit	*
13	Cinnamomum   burmannii	Hit
14	Parameria  laevigata	Hit
15	Caesalpinia  sappan	Hit
16	Soya  max	Hit	*
17	Cocos  nucifera	Hit
18	Rheum  tanguticum	Hit
19	Piper  cubeba	Hit	*
20	Murraya  paniculata	Hit
21	Kaempferia  galanga	Hit	*
22	Coffea  arabica	Hit	*
23	Orthosiphon  stamineus	Hit
24	Curcuma  longa	Hit
25	Piper  nigrum	Hit	*
26	Zingiber  aromaticum	Hit
27	Aloe  vera	Hit
28	Phaleria  papuana	Hit
29	Galla  lusitania	Hit
30	Quercus  lusitanica	Hit
31	Morinda  citrifolia	Hit
32	Myristica  fragrans	Hit	*
33	Momordica  charantia	Hit
34	Areca  catechu	Hit
35	Lepiniopsis  ternatensis	Hit
36	Alstonia  scholaris	Hit
37	Hibiscus  sabdariffa	Hit
38	Laminaria  japonica	Hit
39	Syzygium  polyanthum	Hit
40	Andrographis  paniculata	Hit
41	Sindora  sumatrana	Hit	*
42	Cassia  angustifolia	Hit
43	Woodfordia  floribunda	Hit
44	Piper  betle	Hit
45	Spirulina	Hit
46	Stevia  rebaudiana	Hit
47	Theae  sinensis	Hit
48	Sonchus  arvensis	Hit
49	Curcuma  heyneana	Hit
50	Curcuma  aeruginosa	Hit
51	Kaempferia  pandurata	Hit	*
52	Curcuma  xanthorrhiza	Hit
53	Curcuma  zedoaria	Hit	*
54	Olea  europaea	Hit
I.  Disease  respiratory  diseases
1	Foeniculum  vulgare	Hit
2	Clausena  anisum-olens	Hit
3	Glycyrrhiza  uralensis	Hit
4	Zingiber  purpureum	Hit
5	Piper  retrofractum	Hit	*
6	Syzygium  aromaticum	Hit
7	Gaultheria  punctata	Hit
8	Panax  ginseng	Hit
9	Equisetum  debile	Hit	*
10	Zingiber  officinale	Hit
11	Citrus  aurantium	Hit	*
12	Nigella  sativa	Hit	*
13	Amomum  compactum	Hit
14	Cinnamomum   burmannii	Hit
15	Melaleuca  leucadendra	Hit
16	Parkia  roxburghii	Hit
17	Cocos  nucifera	Hit
18	Piper  cubeba	Hit
19	Kaempferia  galanga	Hit
20	Coriandrum  sativum	Hit
21	Curcuma  longa	Hit
22	Piper  nigrum	Hit
23	Zingiber  aromaticum	Hit
24	Languas  galanga	Hit
25	Mentha  piperita	Hit
26	Oryza  sativa	Hit	*
27	Myristica  fragrans	Hit
28	Pandanus  amaryllifolius	Hit	*
29	Hydrocotyle  asiatica	Hit	*
30	Mentha  arvensis	Hit
31	Lepiniopsis  ternatensis	Hit
32	Helicteres  isora	Hit
33	Blumea  balsamifera	Hit
34	Cymbopogon  nardus	Hit
35	Piper  betle	Hit
36	Curcuma  xanthorrhiza	Hit
37	Salix  alba	Hit	*
38	Matricaria  chamomilla	Miss	*
J.  Disease:  skin  and  connective  tissue
1	Strychnos  ligustrina	Hit
2	Merremia  mammosa	Hit	*
3	Piper  retrofractum	Hit	*
4	Santalum  album	Hit
5	Zingiber  officinale	Hit	*
6	Citrus  aurantium	Hit
7	Citrus  hystrix	Hit
8	Cassia  siamea	Hit
9	Cocos  nucifera	Hit
10	Trigonella  foenum-graecum	Hit
11	Orthosiphon  stamineus	Hit
12	Curcuma  longa	Hit
13	Vetiveria  zizanioides	Hit
14	Aloe  vera	Hit
15	Rosa  chinensis	Hit
16	Jasminum  sambac	Hit
17	Phyllanthus  urinaria	Hit
18	Mentha  piperita	Hit
19	Oryza  sativa	Hit
20	Myristica  fragrans	Hit	*
21	Hydrocotyle  asiatica	Hit
22	Lepiniopsis  ternatensis	Hit
23	Alstonia  scholaris	Hit
24	Andrographis  paniculata	Hit
25	Cymbopogon  nardus	Hit
26	Piper  betle	Hit
27	Theae  sinensis	Hit
28	Curcuma  heyneana	Hit
29	Kaempferia  pandurata	Hit	*
30	Curcuma  xanthorrhiza	Hit
31	Melaleuca  leucadendra	Hit
32	Matricaria  chamomilla	Miss	*
K.  Disease:  the  urinary  system
1	Foeniculum  vulgare	Hit	*
2	Imperata  cylindrica	Hit	*
3	Strychnos  ligustrina	Hit	*
4	Plantago  major	Hit
5	Zingiber  officinale	Hit	*
6	Cinnamomum   burmannii	Hit	*
7	Strobilanthes  crispus	Hit
8	Kaempferia  galanga	Hit	*
9	Orthosiphon  stamineus	Hit
10	Phyllanthus  urinaria	Hit
11	Blumea  balsamifera	Hit	*
12	Sonchus  arvensis	Hit
13	Curcuma  xanthorrhiza	Hit

∗indicates that plant will not assigned if we use matching score >0.7.