biomvRhsmm: Genomic Segmentation with Hidden Semi-Markov Model

Table 1

List of algorithms compared in this paper.

Name	Reference	Method	R package (version)
bcp	Erdman and Emerson (2008) [16]	Product Partition Model	bcp_3.0.1
bioHMM	Marioni et al. (2006) [13]	Heterogeneous HMM	snapCGH_1.30.0
CBS	Venkatraman and Olshen (2007) [14]	Modified Circular Binary Segmentation	DNAcopy_1.34.0
cghseg	Picard et al. (2011) [17]	Joint CGH Segmentation	cghseg_1.0.1
GLAD	Hupé et al. (2004) [10]	Adaptive Weights Smoothing	GLAD_2.24.0
HaarSeg	Ben-Yaacov and Eldar (2008) [15]	Wavelet Decomposition and Thresholding	HaarSeg_0.0.3
HMM	Fridlyand et al. (2004) [9]	Homogeneous HMM	aCGH_1.38.0