Visualization of Genome Signatures of Eukaryote Genomes by Batch-Learning Self-Organizing Map with a Special Emphasis on Drosophila Genomes
Figure 5
DegeTetra- (a) and DegePenta- (b) BLSOMs for the overlapping 100 kb sequences with a 10 kb sliding step derived from the 12 Drosophila genomes. Nodes containing sequences derived from genomes belonging to more than one group were indicated in black and those belonging to one group were indicated in colors, which were used to distinguish the boxes representing the five Drosophila groups. (c) The distribution pattern for each Drosophila genome on the DegePenta-BLSOM, which was listed in (b). Nodes were indicated in the color representing the group. (d) The level of each pair of complimentary pentanucleotides on the DegePenta-BLSOM listed in (b) was shown as described in Figure 2.
