Detection of Epistatic and Gene-Environment Interactions Underlying Three Quality Traits in Rice Using High-Throughput Genome-Wide Data

Table 3

Estimates of SNP additive effects and interaction effects with the environments under two different heritabilities.

Chr

SNPID

a

ae1

ae2

Power

Par.

Est.

Par.

Est.

Par.

Est.

I

II

I

II

I

II

I

II

1

28

−0.79

−0.81

−0.83

0.63

0.65

0.67

−0.63

−0.60

−0.58

100.00

100.00

2

100

−0.67

−0.67

−0.68

0.39

0.38

0.39

−0.39

−0.37

−0.37

100.00

100.00

3

93

−0.40

−0.41

−0.41

0.32

0.32

0.32

−0.32

−0.31

−0.31

69.00

70.00

I and II stand for two different heritabilities of 50% and 70%, respectively, which are the proportions of total phenotypic variation ascribed to SNP additive effects and additive-environment interaction effects; Power, Par., Est., a, ae₁, and ae₂ have the same definitions as those in Table 1.