Constructing a Genome-Wide LD Map of Wild A. gambiae Using Next-Generation Sequencing

Figure 2

Genome-wide SNP-frequency, LD plots, and number of SNPs per LD block. (a) shows the SNP-frequency (per 400 kb) on A. gambiae chromosomes. The genomic regions (>1 MB) with less than 1 SNP per 150 bp were labeled with green and red lines. (b) shows LD plot of five chromosome arms and zoom in of three particular regions (high LD, chromosome inversion region, and other regions) to illustrate the genome-wide linkage map in detail. (c) The number of SNPs per LD block on chromosomes. The -axes of (a) and (c) correspond to the same positions.

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