A Database of Plastid Protein Families from Red Algae and Apicomplexa and Expression Regulation of the moeB Gene

Table 2

Orthologs of Ycf28 in plastids of Rhodophyta as inferred with ClusterZSL.

Class	Species	Locus	Protein Ycf28	Bit score	-value
Bangiophyceae	Porphyra purpurea	NC_000925	NP_053952.1	50.9
Bangiophyceae	Porphyridium purpureum	NC_023133	YP_008965713.1	48.6
Bangiophyceae	Pyropia haitanensis	NC_021189	YP_007947872.1	52.9
Bangiophyceae	Pyropia perforata	NC_024050	YP_009027626.1	53.3
Bangiophyceae	Pyropia yezoensis	NC_007932	YP_537023.1	55.2
Bangiophyceae	Cyanidioschyzon merolae	NC_004799	NP_849012.1	29.5
Bangiophyceae	Cyanidium caldarium	NC_001840	NP_045121.1	55.8
Florideophyceae	Calliarthron tuberculosum	NC_021075	YP_007878179.1	43.9
Florideophyceae	Chondrus crispus	NC_020795	YP_007627337.1	31.7
Florideophyceae	Gracilaria salicornia	NC_023785	YP_009019566.1	29.0
Florideophyceae	Gracilaria tenuistipitata	NC_006137	YP_063558.1	32.6
Florideophyceae	Grateloupia taiwanensis	NC_021618	YP_008144797.1	33.6

The last two columns contain estimates for the Pfam Crp-like helix-turn-helix domain (PF13545).