Identification of Novel Breast Cancer Subtype-Specific Biomarkers by Integrating Genomics Analysis of DNA Copy Number Aberrations and miRNA-mRNA Dual Expression Profiling

Table 3

The KEGG and CePa pathway enrichment analysis results for the four gene groups.

Gene group	KEGG pathway enrichment analysis	CePa pathway enrichment analysis
Luminal-A gain	hsa05212: pancreatic cancer ()	hsa05212: pancreatic cancer
Luminal-A loss	hsa03440: homologous recombination ()	—
	hsa05200: pathways in cancer ()	—
Basal-like gain	hsa00250: alanine, aspartate, and glutamate metabolism ()	hsa00250: alanine, aspartate, and glutamate metabolism
	hsa04060: cytokine-cytokine receptor interaction ()	hsa04060: cytokine-cytokine receptor interaction
	hsa04810: regulation of actin cytoskeleton ()	—
	hsa04630: Jak-STAT signaling pathway ()	—
	hsa05130: pathogenic Escherichia coli infection ()	—
Basal-like loss	hsa04142: lysosome ()	—
	hsa04512: ECM-receptor interaction ()	—