An Affinity Propagation-Based DNA Motif Discovery Algorithm

Table 4

Results of APMotif on real biological data.

Data set	Predicted motif	Reference motif	()
c-fos	CCATATTAG	CCANATTNG	(9, 2)
Preproinsulin	TGCAGCCTCAGCCCC	CAGCCTCAGCCCCAT	(15, 2)
Yeast ECB	TTACCCNNTTAGGAAA	TTTCCCNNTNAGGAAA	(16, 3)
DHFR	ATTTCGCGCCA	ATTTCGCGCCA	(11, 2)
Metallothionein	TCTGCACCCGGCCCG	CTCTGACNCCGCCC	(15, 2)