Research Article
An Affinity Propagation-Based DNA Motif Discovery Algorithm
Table 4
Results of APMotif on real biological data.
| Data set | Predicted motif | Reference motif | () |
| c-fos | CCATATTAG | CCANATTNG | (9, 2) | Preproinsulin | TGCAGCCTCAGCCCC | CAGCCTCAGCCCCAT | (15, 2) | Yeast ECB | TTACCCNNTTAGGAAA | TTTCCCNNTNAGGAAA | (16, 3) | DHFR | ATTTCGCGCCA | ATTTCGCGCCA | (11, 2) | Metallothionein | TCTGCACCCGGCCCG | CTCTGACNCCGCCC | (15, 2) |
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