Research Article

A Practical and Scalable Tool to Find Overlaps between Sequences

Table 3

Space consumption for Readjoiner and SOF. Clearly with Readjoner, the space consumption increases when using a larger number of threads. In addition, Readjoiner was not able to utilize all 16 threads except in two cases.

Data setReadjoinerReadjoinerReadjoinerSOF
1 thread4 threadsMax # of threads1-4-16 threads

Citrusclementina 25 MB57 MB72 MB, 9 threads 52 MB
Citrussinensis 88 MB107 MB120 MB, 10 threads 80 MB
Citrustrifoliata 26.5 MB39 MB40 MB, 7 threads 25 MB
C. elegans 40 MB48 MB57 MB, 16 threads 100 MB
Attacephalotes 22.7 MB67 MB119 MB, 16 threads 110 MB