miR-1322 Binding Sites in Paralogous and Orthologous Genes

Table 1

Characteristics of miR-1322 binding sites located through three nucleotides in the CDSs of some mRNAs. The number of binding sites in the mRNA fragment is indicated within parentheses.

Gene	Position of binding sites, nt	/, %	Oligopeptide
AFF3	1471–1486 (6)	85.4 ÷ 87.5	SSSSSSSGSSS
AR	1286–1334 (17)	87.5	QQQQQQQQQQQQQQQQQQQQQQ
ARID3B	213–225 (5)	87.5	QQQQQQQQQQ
ASCL1	724–742 (8)	87.5	QQQQQQQQQQQA
ATN1	1692–1731 (13)	87.5 ÷ 91.7	QQQQQQQQQQQQQQQQQH
ATXN1	1559–1592 (12)	85.4 ÷ 91.7	QQQQQQQQQQQQHQHQQ
	1604–1631 (10)	87.5 ÷ 89.6	QQQQQQQQQQQQQQH
ATXN2	657–684 (10)	87.5	QQQQQQQQQQQQQQQ
	699–714 (6)	87.5 ÷ 89.6	QQQQQQQQQPР
ATXN7	637–658 (8)	85.4 ÷ 89.6	QQQQQPPPPQPQ
BCL6B	763–775 (5)	85.4 ÷ 87.5	SSSSSSSSSS
BHLHE22	1224–1236 (5)	85.4 ÷ 87.5	GSSSSSSSSS
BMP2K	1543–1555 (5)	87.5	QQQQQQQQQQ
	1600–1615 (6)	85.4 ÷ 91.7	QQQQQQQQHHH
C9orf43	1283–1298 (6)	85.4 ÷ 87.5	QQQRQQQQQQQ
CELF3	1871–1883 (5)	87.5	QQQQQQQQQQ
E2F4	980–1007 (10)	85.4 ÷ 87.5	SSSSSSSSSSSSSNS
EP400	8333–8363 (11)	87.5	QQQQQQQQQQQQQQQQ
FAM155A	732–753 (8)	85.4 ÷ 87.5	QQQQRQQQQQQQ
FAM157A	408–432 (9)	87.5	QQQQQQQQQQQQQQ
FAM157B	414–435 (8)	85.4 ÷ 87.5	RQQQQQQQQQQQ
HTT	196–247 (19)	85.4 ÷ 89.6	QQQQQQQQQQQQQQQQQQQQQQQ
IRF2BPL	1249–1267 (7)	87.5	QQQQQQQQQQQQ
IRS1	2088–2100 (5)	85.4 ÷ 87.5	SSSSSSSNAV
KCNN3	512–539 (10)	87.5 ÷ 91.7	QQQQQQQQQQQQQQP
KIAA2018	4794–4815 (8)	87.5	QQQQQQQQQQQQQ
MAGI1	1759–1771 (5)	87.5	QQQQQQQQQQ
MAML2	3064–3091 (10)	87.5	QQQQQQQQQQQQQQQ
MAML3	2219–2264 (16)	87.5	QQQQQQQQQQQQQQQQQQHSN
	2678–2690 (5)	87.5 ÷ 91.7	QQQQQPPPPQ
MED15	710–722 (5)	87.5 ÷ 91.7	QQQQQQQQHL
	830–848 (7)	87.5	QQQQQQQQQQQQ
MEF2A	1836–1860 (9)	85.4 ÷ 89.6	GFQQQQQQQQQQQP
MLLT3	729–741 (5)	85.4 ÷ 87.5	SSSSSSSSSS
	762–774 (5)	85.4 ÷ 87.5	SSSSSSSSSS
MN1	2524–2539 (6)	87.5	QQQQQQQQQQQ
MPRIP	622–643 (8)	87.5 ÷ 91.7	SSSSSSSSSSSIP
NAP1L3	549–561 (5)	85.4 ÷ 87.5	GSGSSSSSSG
NCOA3	4023–4038 (6)	87.5	QQQQQQQQQQQ
NCOA6	1126–1138 (5)	87.5	QQQQQQQQQQ
NCOR2	1812–1830 (7)	87.5 ÷ 91.7	QQQQQQQQQQQQ
POLG	408–429 (8)	85.4 ÷ 87.5	QQQQQQQQQQQQQ
POU6F2	701–719 (7)	85.4 ÷ 89.6	QQQQQQQQQQPP
PRPF40A	785–797 (5)	85.4	AAAAAAAAAA
RAI1	1300–1324 (9)	87.5	QQQQQQQQQQQQQQ
SALL1	590–602 (5)	85.4 ÷ 87.5	SSSSSSSSSG
SCAF4	3303–3315 (5)	87.5 ÷ 91.7	QQQQQQQPPP
SMARCA2	765–795 (11)	87.5	QQQQQQQQQQQQQQQQ
SRP14	394–406 (5)	87.5 ÷ 91.7	AAAAAAAAAP
TBP	468–480 (5)	87.5	QQQQQQQQQQ
	501–546 (16)	87.5	QQQQQQQQQQQQQQQQQQQQQ
THAP11	611–629 (7)	87.5 ÷ 91.7	QQQQQQQQQQQQ
TNS1	2348–2363 (6)	87.5 ÷ 91.7	QQQQQQQQQPR
VEZF1	1151–1175 (9)	87.5	TSNQKQQQQQQQQQ
ZNF384	1770–1806 (13)	87.5 ÷ 91.7	QQQQQQQQQQQQQQQQPP