Shaped 3D Singular Spectrum Analysis for Quantifying Gene Expression, with Application to the Early Zebrafish Embryo

Figure 10

CAP-2EXP pattern: 2D slice with expression values, depth ; (a) the surface depicts the reconstructed pattern (in the regular grid points), the points show expression values in individual nuclei from a layer; (b) nuclear residuals from the reconstruction are scattered evenly around the zero plane.

(a)

(b)