BioMed Research International / 2016 / Article / Tab 2

Research Article

PIPINO: A Software Package to Facilitate the Identification of Protein-Protein Interactions from Affinity Purification Mass Spectrometry Data

Table 2

AP-MS data of all proteins being determined as putative interaction of phosphorylated and/or nonphosphorylated STAT1. Significant enrichments are highlighted in bold.

Gene nameBinding to phosphorylated STAT1Binding to nonphosphorylated STAT1Binding depending on phosphorylation Known
from literature
STAT1 + EPO versus GFPSTAT1 versus GFPSTAT1 + EPO versus STAT1
log2 ratioStandard deviation value (-test)log2 ratioStandard deviation value (-test)log2 ratioStandard deviation value (-test)

CHCHD3No
ETFBNo
NDUFS3No
UBE2MNo
UCHL1No
PFKLNo
PGDNo
ERP44No
CANXNo
PYGLNo
UQCRC1No
GLO1No
HSD17B4No
FARSBNo
STAT2Yes
ACTG1 No
TBCA No
SPTAN1 Yes
STAT1 Yes
LDHB Yes
STMN1 No
PABPC3 No
CAPRIN1 No
PTBP2 No
DES No
PLEC Yes
INA No
KPNA6 Yes
KPNA1 Yes
STAT3 Yes

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