Research Article
Improved Production of Aspergillus usamii endo-β-1,4-Xylanase in Pichia pastoris via Combined Strategies
Table 2
Comparison of the codon usage for native (VHb) and synthetic (VHb-opt) targeted genes at Pichia pastoris for expression.
| AA | Codon | Host fraction | VHb | VHb-opt |
| Gly | GGG | 0.10 | 0 | 0 | GGA | 0.32 | 1 | 0 | GGT | 0.44 | 7 | 8 | GGC | 0.14 | 0 | 0 |
| Glu | GAG | 0.43 | 7 | 1 | GAA | 0.57 | 2 | 8 |
| Asp | GAT | 0.58 | 2 | 8 | GAC | 0.42 | 6 | 0 |
| Val | GTG | 0.19 | 0 | 0 | GTA | 0.15 | 0 | 0 | GTT | 0.42 | 4 | 10 | GTC | 0.23 | 10 | 4 |
| Ala | GCG | 0.06 | 0 | 0 | GCA | 0.23 | 0 | 0 | GCT | 0.45 | 17 | 23 | GCC | 0.26 | 6 | 0 |
| Arg | AGG | 0.16 | 0 | 0 | AGA | 0.48 | 1 | 2 | CGG | 0.05 | 0 | 0 | CGA | 0.10 | 0 | 0 | CGT | 0.16 | 1 | 0 | CGC | 0.05 | 0 | 0 |
| Lys | AAG | 0.53 | 9 | 10 | AAA | 0.47 | 1 | 0 |
| Ser | AGT | 0.15 | 0 | 0 | AGC | 0.09 | 0 | 0 | TCG | 0.09 | 0 | 0 | TCA | 0.19 | 0 | 0 | TCT | 0.29 | 0 | 1 | TCC | 0.20 | 1 | 0 |
| Stop | TAA | 0.53 | 1 | 1 |
| Asn | AAT | 0.49 | 0 | 0 | AAC | 0.51 | 4 | 4 |
| Met | ATG | 1.00 | 3 | 3 |
| Ile | ATA | 0.19 | 0 | 0 | ATT | 0.50 | 5 | 5 | ATC | 0.30 | 7 | 7 |
| Thr | ACG | 0.11 | 0 | 0 | ACA | 0.24 | 0 | 0 | ACT | 0.40 | 1 | 8 | ACC | 0.25 | 7 | 0 |
| Trp | TGG | 1.00 | 1 | 1 |
| Cys | TGT | 0.65 | 1 | 1 | TGC | 0.35 | 0 | 0 |
| Tyr | TAT | 0.46 | 0 | 0 | TAC | 0.55 | 4 | 4 |
| Leu | TTG | 0.33 | 14 | 14 | TTA | 0.16 | 0 | 0 | CTG | 0.16 | 0 | 0 | CTA | 0.11 | 0 | 0 | CTT | 0.16 | 0 | 0 | CTC | 0.08 | 0 | 0 |
| Phe | TTT | 0.54 | 0 | 2 | TTC | 0.46 | 4 | 2 |
| Gln | CAG | 0.39 | 6 | 2 | CAA | 0.61 | 3 | 7 |
| His | CAT | 0.57 | 1 | 4 | CAC | 0.43 | 3 | 0 |
| Pro | CCC | 0.15 | 0 | 0 | CCG | 0.09 | 0 | 0 | CCA | 0.41 | 6 | 7 | CCT | 0.35 | 1 | 0 |
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