A Novel Peptide Binding Prediction Approach for HLA-DR Molecule Based on Sequence and Structural Information

Table 3

Important positions at the binding core for MHC II molecules.

Pocket	Important positions
Pocket 1	82 85 86 89
Pocket 2	77 78 81 82
Pocket 3	78
Pocket 4	11 13 26 28 70 71 74 78
Pocket 5	11 13 28 70 71 74
Pocket 6	11 13 28 70 71 74
Pocket 7	11 28 30 47 61 67 70 71
Pocket 8	60 61
Pocket 9	9 30 37 57 60 61