Research Article

Development of Primer Pairs from Molecular Typing of Rabies Virus Variants Present in Mexico

Table 1

RABV N gene sequence for external and internal primer design for different rabies variant.

Nonhematophagous bat
GIHostCountryCollection date

AF351832.1Eptesicus fuscus (big brown bat)
GU644667.1Eptesicus fuscus (big brown bat)USA: Michigan2005
GU644664.1Eptesicus fuscus (big brown bat)USA: Michigan2003
GU644662.1Eptesicus fuscus (big brown bat)USA: Michigan2003
AY039229.1Eptesicus fuscus (big brown bat)USA: Adams County, Pennsylvania1984
AY039228.1Eptesicus fuscus (big brown bat)USA: El Paso County, Colorado1985
GU644676.1Eptesicus fuscus (big brown bat)USA: Virginia2004
GU644668.1Eptesicus fuscus (big brown bat)USA: Michigan2005
AF351862.1Eptesicus fuscus (big brown bat)
GU644655.1Eptesicus fuscus (big brown bat)USA: Iowa2005
GU644695.1Eptesicus fuscus (big brown bat)USA: Washington2005
GU644661.1Eptesicus fuscus (big brown bat)USA: Michigan2003
AY039227.1Eptesicus fuscus (big brown bat)USA: Washington1987
GU644677.1Eptesicus fuscus (big brown bat)USA: Virginia2004
GU644670.1Eptesicus fuscus (big brown bat)USA: Michigan2005
GU644666.1Eptesicus fuscus (big brown bat)USA: Michigan2005
GU644660.1Eptesicus fuscus (big brown bat)USA: Michigan2003
GU644656.1Eptesicus fuscus (big brown bat)USA: Iowa2005
GU644654.1Eptesicus fuscus (big brown bat)USA: Iowa2005
GU644690.1Eptesicus fuscus (big brown bat)USA: Washington2004
GU644669.1Eptesicus fuscus (big brown bat)USA: Michigan2005
AF351861.1Eptesicus fuscus (big brown bat)
GU644689.1Eptesicus fuscus (big brown bat)USA: Washington2004
GU644684.1Eptesicus fuscus (big brown bat)USA: Washington2003
GU644663.1Eptesicus fuscus (big brown bat)USA: Michigan2003
GU644659.1Eptesicus fuscus (big brown bat)USA: Michigan2003
GU644657.1Eptesicus fuscus (big brown bat)USA: Michigan2003
AF351833.1Eptesicus fuscus (big brown bat)
AF351828.1Eptesicus fuscus (big brown bat)
GU644665.1Eptesicus fuscus (big brown bat)USA: Michigan2005
GU644671.1Eptesicus fuscus (big brown bat)USA: New Jersey2005
GU644658.1Eptesicus fuscus (big brown bat)USA: Michigan2003
GU644652.1Eptesicus fuscus (big brown bat)USA: Georgia2004
AF351831.1Eptesicus fuscus (big brown bat)
AF351855.1Eptesicus fuscus (big brown bat)
GU644754.1Nycticeius humeralis (evening bat )USA: Florida2001
AF351854.1Eptesicus fuscus (big brown bat)
AF394868.1Antrozous pallidus (pallid bat)USA: Monterey, California1991
AY039225.1Myotis austroriparius (southeastern myotis bat)USA: Highlands County, Florida1988
AF351829.1Eptesicus fuscus (big brown bat)
AF394871.1Myotis californicus (California bat)USA: Plumas County, California1987
AF351859.1Eptesicus fuscus (big brown bat)
AF351860.1Eptesicus fuscus (big brown bat)
GU644673.1Eptesicus fuscus (big brown bat)USA: New Jersey2005
AY039226.1Eptesicus fuscus (big brown bat)USA: Perry County, Pennsylvania1984
AF351839.1Myotis sp. (bat)
AF351853.1Eptesicus fuscus (big brown bat)
HQ341796.1Myotis chiloensis (bat)Chile2009
AF351827.1Eptesicus fuscus (big brown bat)
GU644675.1Eptesicus fuscus (big brown bat)USA: New Jersey2005

Skunk
GIHostCountryCollection date

JQ513553Skunk V854Mexico: San Luis Potosí2002
JQ513552Skunk V658USA: Mariposa County, California1997
JQ513548Skunk V652USA: Mariposa County, California1997
JQ513547Skunk V651USA: Mariposa County, California1997
JQ513551Fox V657USA: Mariposa County, California1997
JQ513541Dog V640USA: Sonoma County, California1994
JQ513546SkunkUSA: Trinity County, California1997
JQ513542Mountain lionUSA: Yolo County, California1994
JQ513545SkunkUSA: Mendocino County, California1997
JQ513549SkunkUSA: Amador County, California1997
JQ513539SkunkUSA: Glenn County, California1994
JQ513544SkunkUSA: Colusa County, California1994
JQ513540SkunkUSA: Sutter County, California1994
JQ513550SkunkUSA: Glenn County, California1997
FJ228485CowMexico: Chihuahua1999
FJ228484Spilogale putorius leucoparia, skunkMexico: San Luis Potosí2002
FJ228483Spilogale putorius leucoparia, skunkMexico: Zacatecas2001
JX856026.1Mephitis mephitis (striped skunk)USA2009
JX856036.1 Bovine (cow)USA2009
JX856035.1Mephitis mephitis (striped skunk)USA2009
JX855972.1Felis silvestris (bobcat)USA2009
JX856024.1Mephitis mephitis (striped skunk)USA2009
JX856023.1 Bovine (cow)USA2009
JX856017.1 Bovine (cow)USA2009
JX856016.1Mephitis mephitis (striped skunk)USA2009
JX856015.1Mephitis mephitis (striped skunk)USA2009
JX856014.1Mephitis mephitis (striped skunk)USA2009
JX856006.1Mephitis mephitis (striped skunk)USA2009
JX856004.1Mephitis mephitis (striped skunk)USA2009
JX856001.1Mephitis mephitis (striped skunk)USA2009
JX855993.1Mephitis mephitis (striped skunk)USA2009
JX855990.1Mephitis mephitis (striped skunk)USA2009
JX855980.1Felis catus (cat)USA2009
JX855988.1Mephitis mephitis (striped skunk)USA2009
JX855987.1Mephitis mephitis (striped skunk)USA2009
JX855986.1Mephitis mephitis (striped skunk)USA2009
JX855985.1Mephitis mephitis (striped skunk)USA2009
JX855984.1Mephitis mephitis (striped skunk)USA2009
JX855981.1Mephitis mephitis (striped skunk)USA2009
JX855979.1Felis catus (cat)USA2009
JX855973.1Mephitis mephitis (striped skunk)USA2009
JX855976.1Canis lupus familiaris (dog)USA2009
JX855975.1Mephitis mephitis (striped skunk)USA2009
JX855974.1Mephitis mephitis (striped skunk)USA2009
JX855970.1Mephitis mephitis (striped skunk)USA2009
JX855968.1Mephitis mephitis (striped skunk)USA2009
JX855967.1Mephitis mephitis (striped skunk)USA2009
JX855966.1Mephitis mephitis (striped skunk)USA2009
JX855965.1Equus caballus (horse)USA2009
JX855963.1Mephitis mephitis (striped skunk)USA2009
JX855962.1Mephitis mephitis (striped skunk)USA2009

Dog
GIHostCountryCollection date

FJ228513.1Canis lupus familiaris (dog)Mexico: Estado de México2000
FJ228512.1 Canis lupus familiaris (dog)Mexico: Estado de México2002
FJ228507.1Canis lupus familiaris (dog)Mexico: Estado de México1999
FJ228532.1Canis lupus familiaris (dog)Mexico: Puebla1995
FJ228506.1Canis lupus familiaris (dog)Mexico: Guerrero1999
FJ228505.1Canis lupus familiaris (dog)Mexico: Tlaxcala2002
FJ228504.1Canis lupus familiaris (dog)Mexico: Puebla2001
FJ228503.1Canis lupus familiaris (dog)Mexico: Tlaxcala2000
FJ228502.1Canis lupus familiaris (dog)Mexico: Distrito Federal1999
KJ001535.1Canis lupus familiaris (dog)Mexico2005
KJ001525.1Canis lupus familiaris (dog)Mexico2009
KJ001524.1Canis lupus familiaris (dog)Mexico2005
KJ001518.1Canis lupus familiaris (dog)Mexico2011
KJ001517.1Canis lupus familiaris (dog)Mexico2011
KJ001516.1Canis lupus familiaris (dog)Mexico2011
KJ001515.1Canis lupus familiaris (dog)Mexico2011
KJ001509.1Canis lupus familiaris (dog)Mexico2009
KJ001502.1Canis lupus familiaris (dog)Mexico2006
KJ001500.1Canis lupus familiaris (dog)Mexico2006
KJ001499.1Canis lupus familiaris (dog)Mexico2006
KJ001492.1Canis lupus familiaris (dog)Mexico2005
KJ001490.1Canis lupus familiaris (dog)Mexico2005
KJ001488.1Canis lupus familiaris (dog)Mexico2005
FJ228525.1Canis lupus familiaris (dog)Mexico: Yucatán2002
FJ228523.1Canis lupus familiaris (dog)Mexico: Yucatán1998
FJ228521.1Canis lupus familiaris (dog)Mexico: Durango1991
FJ228518.1Canis lupus familiaris (dog)Mexico: Chiapas2002
FJ228511.1Bos taurus (cow)Mexico: Puebla1994
FJ228510.1Sus scrofa domesticus (pig)Mexico: Distrito Federal1991
FJ228509.1Mustela putorius furo (ferret)Mexico: Distrito Federal1990
FJ228508.1Homo sapiens (human)Mexico: Distrito Federal1991
FJ228522.1Bos taurus (cow)Mexico: Chihuahua1994
FJ228519.1Felis catus (cat)Mexico: Michoacán1990
AY854591.1Canis lupus familiaris (dog)Mexico
AY854589.1Canis lupus familiaris (dog)Mexico
FJ228526.1Canis latrans (coyote)Mexico: Coahuila2001

Vampire bat
GU991828.1Desmodontinae (vampire bat V3)
GU991827.1Desmodontinae (vampire bat V3)Mexico: East Mexico1999
GU991826.1Desmodontinae (vampire bat V3)Mexico: East Mexico1999
GU991825.1Desmodontinae (vampire bat V3)Mexico: East Mexico2004
GU991824.1Desmodontinae (vampire bat V11)Mexico: East Mexico2002
GU991823.1Desmodontinae (vampire bat V11)East Mexico2003
KP202393.1Desmodontinae (vampire bat)Mexico1988
AY854592.1Desmodontinae (vampire bat)Mexico
AY854587.1Desmodontinae (vampire bat)Mexico
AY854595.1Desmodontinae (vampire bat)Mexico
AY854594.1Desmodontinae (vampire bat)Mexico
FJ228491.1Bos taurus (cow)Mexico: Tamaulipas2003
FJ228490.1Bos taurus (cow)Mexico: Veracruz2003
FJ228489.1Ovis aries (sheep)Mexico: Hidalgo2003
FJ228488.1Bos taurus (cow)Mexico: San Luis Potosí2004
AY877435.1Desmodontinae (vampire bat)
AY877434.1Desmodontinae (vampire bat)
AY877433.1Desmodontinae (vampire bat)