Comparative Genomics of H. pylori and Non-Pylori Helicobacter Species to Identify New Regions Associated with Its Pathogenicity and Adaptability
Table 1
Helicobacter species genomic information used in the present study.
Organism
Size (bp)
GC ()
Scaffolds
Plasmids
CDS
rRNA
tRNA
Natural host
H. acinonychis str. Sheeba
1557588
38.17
1
1
1706
6
36
Cheetah, tiger
H. ailurogastricus
1578404
47.05
9
0
1633
3
36
Feline
H. bilis ATCC 43879
2530521
34.7
9
0
2728
3
36
Mice
H. bilis WiWa
2559659
34.68
17
0
2751
9
40
Mice
H. bizzozeronii CIII-1
1807534
45.66
1
1
1998
6
36
Dog, cat
H. canadensis MIT 98-5491
1623845
33.69
1
0
1624
9
40
Barnacle, geese, rodent
H. canis NCTC 12740
1932823
44.82
1
0
1914
6
39
Dogs
H. cetorum MIT 00-7128
1960111
34.53
1
1
1897
6
38
dolphin, whale
H. cetorum MIT 99-5656
1847790
35.54
1
1
1852
6
36
dolphin, whale
H. cinaedi CCUG 18818 ATCC BAA-847
2240130
38.34
1
0
2510
6
39
Human
H. cinaedi PAGU611
2101402
38.55
1
1
2329
6
39
Human
H. felis ATCC 49179
1672681
44.51
1
0
1776
5
36
Cat, dog, rabbit, cheetah
H. fennelliae MRY12-0050
2155647
37.9
49
0
2503
3
38
Human
H. heilmannii ASB1.4
1804601
47.38
1
0
2113
7
41
Human
H. hepaticus ATCC 51449
1799146
35.93
1
0
1863
3
37
Mice
H. himalayensis strain YS1
1829936
39.89
1
0
1896
6
39
Marmota himalayana
H. macacae MIT 99-5501
2369528
40.41
4
0
2669
6
39
Macaques
H. mustelae 12198
1578097
42.47
1
0
1745
6
38
Ferret
H. pametensis ATCC 51478
1435066
40.08
11
0
1432
8
38
Pig, bird
H. pullorum 229313-12
1691799
34.56
60
0
1754
3
36
Poultry
H. pullorum MIT 98-5489
1951667
33.58
44
0
2105
3
36
Poultry
H. suis HS1
1635292
39.91
136
0
1814
5
38
Pig, macaque
H. typhlonius
1920832
38.85
1
0
2109
6
39
Mouse
H. winghamensis ATCC BAA-430
1690216
34.74
21
0
1742
3
36
human liver
H. pylori 2017
1548238
39.3
1
0
1595
3
36
Human
H. pylori 2018
1562832
39.29
1
0
1604
3
36
Human
H. pylori 26695-1CH
1667302
38.87
1
0
1667
7
36
Human
H. pylori 26695-1CL
1667239
38.87
1
0
1667
7
36
Human
H. pylori 26695-1
1667638
38.87
1
0
1667
7
36
Human
H. pylori 26695-1MET
1667303
38.87
1
0
1669
7
36
Human
H. pylori 26695
1667867
38.87
1
0
1681
7
36
Human
H. pylori 29CaP
1667159
38.81
1
0
1704
7
36
Human
H. pylori 35A
1566655
38.87
1
0
1583
6
36
Human
H. pylori 51
1589954
38.77
1
0
1606
6
36
Human
H. pylori 52
1568826
38.94
1
0
1578
6
36
Human
H. pylori 7C
1631276
39.01
1
1
1627
7
36
Human
H. pylori 83
1617426
38.72
1
0
1634
6
36
Human
H. pylori 908
1549666
39.3
1
0
1605
3
36
Human
H. pylori Aklavik117
1636125
38.73
1
2
1607
6
36
Human
H. pylori Aklavik86
1507930
39.21
1
2
1487
6
36
Human
H. pylori B38
1576758
39.16
1
0
1582
7
36
Human
H. pylori B8
1680029
38.78
1
1
1673
6
36
Human
H. pylori BM012A
1660425
38.88
1
0
1679
7
36
Human
H. pylori BM012B
1659060
38.88
1
0
1676
7
36
Human
H. pylori BM012S
1660469
38.88
1
0
1683
7
36
Human
H. pylori BM013A
1604233
38.96
1
0
1584
7
36
Human
H. pylori BM013B
1604212
38.96
1
0
1586
7
36
Human
H. pylori Cuz20
1635449
38.86
1
0
1616
6
36
Human
H. pylori ELS37
1669876
38.88
1
1
1676
6
36
Human
H. pylori F16
1575399
38.88
1
0
1593
6
36
Human
H. pylori F30
1579693
38.8
1
1
1582
6
36
Human
H. pylori F32
1581461
38.86
1
1
1587
6
36
Human
H. pylori F57
1609006
38.73
1
0
1619
6
36
Human
H. pylori G27
1663013
38.87
1
1
1672
7
36
Human
H. pylori Gambia9424
1712468
39.12
1
1
1694
6
36
Human
H. pylori Hp238
1586473
38.7
1
0
1616
5
36
Human
H. pylori HPAG1
1605736
39.07
1
1
1595
6
36
Human
H. pylori HUP-B14
1607584
39.04
1
1
1597
6
36
Human
H. pylori India7
1675918
38.9
1
0
1664
6
36
Human
H. pylori J166
1650561
38.93
1
0
1630
6
36
Human
H. pylori J99
1643831
39.19
1
0
1629
6
36
Human
H. pylori Lithuania75
1640673
38.87
1
1
1659
6
36
Human
H. pylori ML1
1629815
38.69
1
0
1701
6
36
Human
H. pylori ML2
1562125
38.92
1
0
1764
6
36
Human
H. pylori ML3
1635334
38.64
1
1
1744
4
36
Human
H. pylori NY40
1696917
38.81
1
0
1751
6
36
Human
H. pylori OK113
1616617
38.73
1
0
1649
6
36
Human
H. pylori OK310
1595436
38.77
1
1
1595
6
36
Human
H. pylori oki102
1633212
38.81
1
0
1630
6
36
Human
H. pylori oki112
1637925
38.81
1
0
1635
6
36
Human
H. pylori oki128
1553826
38.97
1
0
1565
6
36
Human
H. pylori oki154
1599700
38.8
1
0
1626
6
36
Human
H. pylori oki422
1634852
38.83
1
0
1641
6
36
Human
H. pylori oki673
1595058
38.82
1
0
1623
6
36
Human
H. pylori oki828
1600345
38.8
1
0
1618
6
36
Human
H. pylori oki898
1634875
38.83
1
0
1612
6
36
Human
H. pylori P12
1684038
38.79
1
1
1688
6
36
Human
H. pylori PeCan18
1660685
39.02
1
0
1629
6
36
Human
H. pylori PeCan4
1638269
38.91
1
1
1622
6
36
Human
H. pylori Puno120
1637762
38.9
1
1
1617
6
36
Human
H. pylori Puno135
1646139
38.82
1
0
1616
6
36
Human
H. pylori Rif1
1667883
38.87
1
0
1678
7
36
Human
H. pylori Rif2
1667890
38.87
1
0
1674
7
36
Human
H. pylori Sat464
1567570
39.09
1
1
1553
6
36
Human
H. pylori Shi112
1663456
38.77
1
0
1651
6
36
Human
H. pylori Shi169
1616909
38.86
1
0
1593
6
36
Human
H. pylori Shi417
1665719
38.77
1
0
1623
6
36
Human
H. pylori Shi470
1608548
38.91
1
0
1612
6
36
Human
H. pylori SJM180
1658051
38.9
1
0
1640
6
36
Human
H. pylori SNT49
1610830
39
1
1
1599
6
36
Human
H. pylori SouthAfrica20
1622903
38.57
1
0
1701
6
36
Human
H. pylori SouthAfrica7
1679829
38.42
1
1
1689
6
36
Human
H. pylori UM032
1593537
38.82
1
0
1613
6
36
Human
H. pylori UM037
1692794
38.89
1
0
1708
6
36
Human
H. pylori UM066
1658047
38.62
1
0
1651
6
36
Human
H. pylori UM298
1594544
38.82
1
0
1618
6
36
Human
H. pylori UM299
1594569
38.82
1
0
1617
6
36
Human
H. pylori v225d
1595604
38.94
1
1
1608
6
36
Human
H. pylori XZ274
1656544
38.57
1
1
1798
7
36
Human
Note: (1) associated with gastric disease in humans. (2) Latin name, genome size, GC-content, scaffolds number, plasmid number, information of genes, and natural host are listed.
