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BioMed Research International
Volume 2016, Article ID 7215379, 7 pages
http://dx.doi.org/10.1155/2016/7215379
Research Article

Genomic Analysis of a Marine Bacterium: Bioinformatics for Comparison, Evaluation, and Interpretation of DNA Sequences

1School of Life Sciences, Swami Ramanand Teerth Marathwada University, Nanded 431606, India
2Institute of Natural Resources and Agrobiology, Spanish National Research Council, IRNAS-CSIC, Avda. Reina Mercedes 10, 41012 Sevilla, Spain

Received 11 July 2016; Revised 10 October 2016; Accepted 13 October 2016

Academic Editor: Marco Bazzicalupo

Copyright © 2016 Bhagwan N. Rekadwad et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. R. Rosselló-Mora and R. Amann, “The species concept for prokaryotes,” FEMS Microbiology Reviews, vol. 25, no. 1, pp. 39–67, 2001. View at Publisher · View at Google Scholar · View at Scopus
  2. M. S. Rappé and S. J. Giovannoni, “The uncultured microbial majority,” Annual Review of Microbiology, vol. 57, pp. 369–394, 2003. View at Publisher · View at Google Scholar · View at Scopus
  3. T. P. Curtis, W. T. Sloan, and J. W. Scannell, “Estimating prokaryotic diversity and its limits,” Proceedings of the National Academy of Sciences of the United States of America, vol. 99, no. 16, pp. 10494–10499, 2002. View at Publisher · View at Google Scholar · View at Scopus
  4. C. Pedrós-Alió, “Marine microbial diversity: can it be determined?” Trends in Microbiology, vol. 14, no. 6, pp. 257–263, 2006. View at Publisher · View at Google Scholar · View at Scopus
  5. J. P. Meier-Kolthoff, A. F. Auch, H.-P. Klenk, and M. Göker, “Genome sequence-based species delimitation with confidence intervals and improved distance functions,” BMC Bioinformatics, vol. 14, article 60, 2013. View at Publisher · View at Google Scholar · View at Scopus
  6. B. N. Rekadwad and C. N. Khobragade, “Digital data for Quick Response (QR) codes of thermophiles to identify and compare the bacterial species isolated from Unkeshwar hot springs (India),” Data in Brief, vol. 6, pp. 53–67, 2016. View at Publisher · View at Google Scholar · View at Scopus
  7. B. N. Rekadwad and C. N. Khobragade, “Bioinformatics data supporting revelatory diversity of cultivable thermophiles isolated and identified from two terrestrial hot springs, Unkeshwar, India,” Data in Brief, vol. 7, pp. 1511–1514, 2016. View at Publisher · View at Google Scholar
  8. B. N. Rekadwad and A. P. Pathak, “First report on relevatory diversity of Unkeshwar hot spring (India) having biotechnological applications,” Indian Journal of Biotechnology, vol. 15, pp. 195–200, 2016. View at Google Scholar
  9. N. Saitou and M. Nei, “The neighbor-joining method: a new method for reconstructing phylogenetic trees,” Molecular Biology and Evolution, vol. 4, no. 4, pp. 406–425, 1987. View at Google Scholar · View at Scopus
  10. J. Felsenstein, “Confidence limits on phylogenies: an approach using the bootstrap,” Evolution, vol. 39, no. 4, pp. 783–791, 1985. View at Publisher · View at Google Scholar
  11. K. Tamura, M. Nei, and S. Kumar, “Prospects for inferring very large phylogenies by using the neighbor-joining method,” Proceedings of the National Academy of Sciences of the United States of America, vol. 101, no. 30, pp. 11030–11035, 2004. View at Publisher · View at Google Scholar · View at Scopus
  12. K. Tamura, G. Stecher, D. Peterson, A. Filipski, and S. Kumar, “MEGA6: molecular evolutionary genetics analysis version 6.0,” Molecular Biology and Evolution, vol. 30, no. 12, pp. 2725–2729, 2013. View at Publisher · View at Google Scholar · View at Scopus
  13. B. N. Rekadwad and C. N. Khobragade, “Digital data for quick response (QR) codes of alkalophilic Bacillus pumilus to identify and to compare bacilli isolated from Lonar Crator Lake, India,” Data in Brief, vol. 7, pp. 1306–1313, 2016. View at Publisher · View at Google Scholar
  14. M. A. Larkin, G. Blackshields, N. P. Brown et al., “Clustal W and clustal X version 2.0,” Bioinformatics, vol. 23, no. 21, pp. 2947–2948, 2007. View at Publisher · View at Google Scholar · View at Scopus
  15. R. Chenna, H. Sugawara, T. Koike et al., “Multiple sequence alignment with the Clustal series of programs,” Nucleic Acids Research, vol. 31, no. 13, pp. 3497–3500, 2003. View at Publisher · View at Google Scholar · View at Scopus