Research Article
VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
Table 1
Software list for synteny and collinearity visualization.
| Software name | Publishing year | Graphical synteny | Visualization types | Vector graphics |
| MCMuSeC | 2009 | ✕ | ✕ | ✕ | OrthoCluster | 2009 | ✓ | Dual bar, linear | ✕ | i-ADHoRe 3 | 2011 | ✓ | Dotted hierarchy | | FISH | 2003 | ✕ | ✕ | ✕ | ColinearScan | 2006 | ✕ | ✕ | ✕ | MCScan | 2008 | ✕ | ✕ | ✕ | CYNTENATOR | 2010 | ✕ | ✕ | ✕ | SyMAP | 2011 | ✓ | Dual bar | ✕ | MCScanX | 2012 | ✓ | Dotted linear circular | ✕ | SynChro | 2014 | ✓ | Dual bar | ✕ | GSV | 2011 | ✓ | Dual bar | ✕ | EasyFig | 2011 | ✓ | Dual bar | | C-Sibelia | 2013 | ✕ | Circos-format | ✕ | Gbrowse-syn | 2010 | ✓ | Dual bar | ✕ | Kegg | 2000 | ✓ | Network | ✕ | Circos | 2009 | ✓ | Circular | ✓ | WebLogo | 2004 | ✕ | Textual | ✓ | VGSC | 2015 | | Dotted linear circular | |
|
|