QuaBingo: A Prediction System for Protein Quaternary Structure Attributes Using Block Composition

Table 3

Performance comparison of model combination with SVM in 10-fold cross-validation for oligomer classification in the second layer.

	⁢		⁢		⁢		⁢
	ACC (%)	MCC	ACC (%)	MCC	ACC (%)	MCC	ACC (%)	MCC
Monomer	75.75	0.552	78.91	0.579	82.64	0.663	82.64	0.663
Homooligomer
Dimer	71.01	0.456	83.00	0.660	83.00	0.660	83.00	0.660
Trimer	90.22	0.806	95.48	0.909	95.48	0.909	95.47	0.907
Tetramer	84.21	0.638	90.12	0.776	93.41	0.854	93.41	0.854
Pentamer	80.48	0.649	98.57	0.973	98.57	0.973	98.57	0.973
Hexamer	84.27	0.712	94.27	0.887	96.94	0.939	96.94	0.939
Octamer	74.40	0.566	84.17	0.709	85.60	0.743	84.17	0.709
Decamer	85.83	0.759	95.83	0.928	98.33	0.971	98.33	0.971
Dodecamer	81.50	0.680	96.75	0.941	99.00	0.982	99.00	0.982
Overall	81.49	0.658	92.27	0.848	93.79	0.879	93.61	0.874
Heterooligomer
Dimer	85.01	0.659	86.73	0.697	88.89	0.767	88.89	0.767
Trimer	80.87	0.600	91.93	0.835	91.93	0.835	92.07	0.836
Tetramer	85.79	0.706	92.82	0.853	94.48	0.889	94.48	0.889
Pentamer	77.50	0.577	89.17	0.799	93.33	0.886	93.33	0.886
Hexamer	84.86	0.698	90.42	0.812	90.42	0.812	93.72	0.875
Octamer	72.67	0.484	87.67	0.782	87.67	0.782	87.67	0.782
Decamer	92.50	0.873	97.50	0.958	100.00	1.000	97.50	0.958
Dodecamer	84.50	0.733	90.33	0.823	95.33	0.916	95.33	0.916
Overall	82.96	0.666	90.82	0.820	92.76	0.861	92.88	0.863