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BioMed Research International
Volume 2017, Article ID 3065251, 12 pages
https://doi.org/10.1155/2017/3065251
Research Article

Comparative Metabolome Profile between Tobacco and Soybean Grown under Water-Stressed Conditions

1Texas A&M AgriLife Research and Extension Center, Dallas, TX 75252, USA
2The Scripps Research Institute, La Jolla, CA 92037, USA

Correspondence should be addressed to Roel C. Rabara; ude.etatsds.skcaj@arabar.leor and Prateek Tripathi; ude.etatsds.skcaj@ihtapirt.keetarp

Received 4 September 2016; Revised 25 October 2016; Accepted 3 November 2016; Published 3 January 2017

Academic Editor: Peter J. Oefner

Copyright © 2017 Roel C. Rabara et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. E. Cominelli, L. Conti, C. Tonelli, and M. Galbiati, “Challenges and perspectives to improve crop drought and salinity tolerance,” New Biotechnology, vol. 30, no. 4, pp. 355–361, 2013. View at Publisher · View at Google Scholar · View at Scopus
  2. G. R. Cramer, K. Urano, S. Delrot, M. Pezzotti, and K. Shinozaki, “Effects of abiotic stress on plants: a systems biology perspective,” BMC Plant Biology, vol. 11, no. 1, article 163, 2011. View at Publisher · View at Google Scholar · View at Scopus
  3. R. C. Rabara, P. Tripathi, and P. J. Rushton, “The potential of transcription factor-based genetic engineering in improving crop tolerance to drought,” OMICS A Journal of Integrative Biology, vol. 18, no. 10, pp. 601–614, 2014. View at Publisher · View at Google Scholar · View at Scopus
  4. USDA-ERS, U.S. Drought 2012: Farm and Food Impacts, 2012.
  5. Y. Kang, S. Khan, and X. Ma, “Climate change impacts on crop yield, crop water productivity and food security—a review,” Progress in Natural Science, vol. 19, no. 12, pp. 1665–1674, 2009. View at Publisher · View at Google Scholar · View at Scopus
  6. T. Obata and A. R. Fernie, “The use of metabolomics to dissect plant responses to abiotic stresses,” Cellular and Molecular Life Sciences, vol. 69, no. 19, pp. 3225–3243, 2012. View at Publisher · View at Google Scholar · View at Scopus
  7. H. V. Davies, L. V. T. Shepherd, D. Stewart, T. Frank, R. M. Röhlig, and K.-H. Engel, “Metabolome variability in crop plant species—when, where, how much and so what?” Regulatory Toxicology and Pharmacology, vol. 58, no. 3, pp. S54–S61, 2010. View at Publisher · View at Google Scholar · View at Scopus
  8. K. Saito and F. Matsuda, “Metabolomics for functional genomics, systems biology, and biotechnology,” Annual Review of Plant Biology, vol. 61, pp. 463–489, 2010. View at Publisher · View at Google Scholar · View at Scopus
  9. O. Fiehn, “Metabolomics—the link between genotypes and phenotypes,” Plant Molecular Biology, vol. 48, no. 1-2, pp. 155–171, 2002. View at Publisher · View at Google Scholar · View at Scopus
  10. R. J. Bino, R. D. Hall, O. Fiehn et al., “Potential of metabolomics as a functional genomics tool,” Trends in Plant Science, vol. 9, no. 9, pp. 418–425, 2004. View at Publisher · View at Google Scholar · View at Scopus
  11. V. Shulaev, D. Cortes, G. Miller, and R. Mittler, “Metabolomics for plant stress response,” Physiologia Plantarum, vol. 132, no. 2, pp. 199–208, 2008. View at Publisher · View at Google Scholar
  12. R. L. Last, A. D. Jones, and Y. Shachar-Hill, “Towards the plant metabolome and beyond,” Nature Reviews Molecular Cell Biology, vol. 8, no. 2, pp. 167–174, 2007. View at Publisher · View at Google Scholar · View at Scopus
  13. C. R. Warren, I. Aranda, and F. J. Cano, “Metabolomics demonstrates divergent responses of two Eucalyptus species to water stress,” Metabolomics, vol. 8, no. 2, pp. 186–200, 2012. View at Publisher · View at Google Scholar · View at Scopus
  14. J. Krasensky and C. Jonak, “Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory networks,” Journal of Experimental Botany, vol. 63, no. 4, pp. 1593–1608, 2012. View at Publisher · View at Google Scholar · View at Scopus
  15. P. E. Verslues and S. Sharma, “Proline metabolism and its implications for plant-environment interaction,” Arabidopsis Book, vol. 8, Article ID e0140, 2010. View at Publisher · View at Google Scholar
  16. R. C. Rabara, P. Tripathi, R. N. Reese et al., “Tobacco drought stress responses reveal new targets for Solanaceae crop improvement,” BMC Genomics, 2015. View at Publisher · View at Google Scholar · View at Scopus
  17. P. Tripathi, R. C. Rabara, R. N. Reese et al., “A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes,” BMC Genomics, vol. 17, no. 1, p. 102, 2016. View at Publisher · View at Google Scholar
  18. M. J. Oliver, L. Guo, D. C. Alexander, J. A. Ryals, B. W. M. Wone, and J. C. Cushman, “A sister group contrast using untargeted global metabolomic analysis delineates the biochemical regulation underlying desiccation tolerance in Sporobolus stapfianus,” Plant Cell, vol. 23, no. 4, pp. 1231–1248, 2011. View at Publisher · View at Google Scholar · View at Scopus
  19. L. M. Chen, X. A. Zhou, W. B. Li et al., “Genome-wide transcriptional analysis of two soybean genotypes under dehydration and rehydration conditions,” BMC Genomics, vol. 14, no. 1, article no. 687, 2013. View at Publisher · View at Google Scholar · View at Scopus
  20. R. C. Rabara, P. Tripathi, M. K. Choudhary, M. P. Timko, Q. J. Shen, and P. J. Rushton, “Transcriptome profiling of tobacco under water deficit conditions,” Genomics Data, vol. 5, pp. 61–63, 2015. View at Publisher · View at Google Scholar · View at Scopus
  21. P. Tripathi, R. C. Rabara, Q. J. Shen, and P. J. Rushton, “Transcriptomics analyses of soybean leaf and root samples during water-deficit,” Genomics Data, vol. 5, pp. 164–166, 2015. View at Publisher · View at Google Scholar · View at Scopus
  22. J. Wan, R. Griffiths, J. Ying, P. McCourt, and Y. Huang, “Development of drought-tolerant canola (Brassica napus L.) through genetic modulation of ABA-mediated stomatal responses,” Crop Science, vol. 49, no. 5, pp. 1539–1554, 2009. View at Publisher · View at Google Scholar · View at Scopus
  23. M. S. Heschel and C. Riginos, “Mechanisms of selection for drought stress tolerance and avoidance in Impatiens capensis (Balsaminaceae),” American Journal of Botany, vol. 92, no. 1, pp. 37–44, 2005. View at Publisher · View at Google Scholar · View at Scopus
  24. A. Rahnama, R. A. James, K. Poustini, and R. Munns, “Stomatal conductance as a screen for osmotic stress tolerance in durum wheat growing in saline soil,” Functional Plant Biology, vol. 37, no. 3, pp. 255–263, 2010. View at Publisher · View at Google Scholar · View at Scopus
  25. D. W. Hopper, R. Ghan, and G. R. Cramer, “A rapid dehydration leaf assay reveals stomatal response differences in grapevine genotypes,” Horticulture Research, vol. 1, article 2, 2014. View at Publisher · View at Google Scholar
  26. C. Hepworth, T. Doheny-Adams, L. Hunt, D. D. Cameron, and J. E. Gray, “Manipulating stomatal density enhances drought tolerance without deleterious effect on nutrient uptake,” New Phytologist, vol. 208, no. 2, pp. 336–341, 2015. View at Publisher · View at Google Scholar · View at Scopus
  27. J. A. G. Silveira, S. A. M. Araújo, J. P. M. S. Lima, and R. A. Viégas, “Roots and leaves display contrasting osmotic adjustment mechanisms in response to NaCl-salinity in Atriplex nummularia,” Environmental and Experimental Botany, vol. 66, no. 1, pp. 1–8, 2009. View at Publisher · View at Google Scholar · View at Scopus
  28. Y. Zhao, C. Zhao, X. Lu et al., “Investigation of the relationship between the metabolic profile of tobacco leaves in different planting regions and climate factors using a pseudotargeted method based on gas chromatography/mass spectrometry,” Journal of Proteome Research, vol. 12, no. 11, pp. 5072–5083, 2013. View at Publisher · View at Google Scholar · View at Scopus
  29. J. B. Bowne, T. A. Erwin, J. Juttner et al., “Drought responses of leaf tissues from wheat cultivars of differing drought tolerance at the metabolite level,” Molecular Plant, vol. 5, no. 2, pp. 418–429, 2012. View at Publisher · View at Google Scholar · View at Scopus
  30. D. P. Schachtman and J. Q. D. Goodger, “Chemical root to shoot signaling under drought,” Trends in Plant Science, vol. 13, no. 6, pp. 281–287, 2008. View at Publisher · View at Google Scholar · View at Scopus
  31. N. M. Holbrook, V. R. Shashidhar, R. A. James, and R. Munns, “Stomatal control in tomato with ABA-deficient roots: response of grafted plants to soil drying,” Journal of Experimental Botany, vol. 53, no. 373, pp. 1503–1514, 2002. View at Publisher · View at Google Scholar · View at Scopus
  32. C. Borel, A. Frey, A. Marion-Poll, F. Tardieu, and T. Simonneau, “Does engineering abscisic acid biosynthesis in Nicotiana plumbaginifolia modify stomatal response to drought?” Plant, Cell & Environment, vol. 24, no. 5, pp. 477–489, 2001. View at Publisher · View at Google Scholar · View at Scopus
  33. V. Amiard, A. Morvan-Bertrand, J.-P. Billard, C. Huault, F. Keller, and M.-P. Prud'homme, “Fructans, but not the sucrosyl-galactosides, raffinose and loliose, are affected by drought stress in perennial ryegrass,” Plant Physiology, vol. 132, no. 4, pp. 2218–2229, 2003. View at Publisher · View at Google Scholar · View at Scopus
  34. S. Dhaubhadel, Regulation of Isoflavonoid Biosynthesis in Soybean Seeds, INTECH Open Access, 2011.
  35. C. R. Caldwell, S. J. Britz, and R. M. Mirecki, “Effect of temperature, elevated carbon dioxide, and drought during seed development on the isoflavone content of dwarf soybean [Glycine max (L.) Merrill] grown in controlled environments,” Journal of Agricultural and Food Chemistry, vol. 53, no. 4, pp. 1125–1129, 2005. View at Publisher · View at Google Scholar · View at Scopus
  36. P. J. Lea, L. Sodek, M. A. J. Parry, P. R. Shewry, and N. G. Halford, “Asparagine in plants,” Annals of Applied Biology, vol. 150, no. 1, pp. 1–26, 2007. View at Publisher · View at Google Scholar · View at Scopus
  37. T. Degenkolbe, P. T. Do, J. Kopka, E. Zuther, D. K. Hincha, and K. I. Köhl, “Identification of drought tolerance markers in a diverse population of rice cultivars by expression and metabolite profiling,” PLoS ONE, vol. 8, no. 5, Article ID e63637, 2013. View at Publisher · View at Google Scholar · View at Scopus
  38. N. Benkeblia, T. Shinano, and M. Osaki, “Metabolite profiling and assessment of metabolome compartmentation of soybean leaves using non-aqueous fractionation and GC-MS analysis,” Metabolomics, vol. 3, no. 3, pp. 297–305, 2007. View at Publisher · View at Google Scholar · View at Scopus
  39. R. B. Lima, T. B. Dos Santos, L. G. E. Vieira et al., “Heat stress causes alterations in the cell-wall polymers and anatomy of coffee leaves (Coffea arabica L.),” Carbohydrate Polymers, vol. 93, no. 1, pp. 135–143, 2013. View at Publisher · View at Google Scholar · View at Scopus
  40. R. Lo Bianco, M. Rieger, and S.-J. S. Sung, “Effect of drought on sorbitol and sucrose metabolism in sinks and sources of peach,” Physiologia Plantarum, vol. 108, no. 1, pp. 71–78, 2000. View at Publisher · View at Google Scholar · View at Scopus
  41. M. C. F. R. Redillas, S.-H. Park, J. W. Lee et al., “Accumulation of trehalose increases soluble sugar contents in rice plants conferring tolerance to drought and salt stress,” Plant Biotechnology Reports, vol. 6, no. 1, pp. 89–96, 2012. View at Publisher · View at Google Scholar · View at Scopus
  42. C. Cortina and F. A. Culiáñez-Macià, “Tomato abiotic stress enhanced tolerance by trehalose biosynthesis,” Plant Science, vol. 169, no. 1, pp. 75–82, 2005. View at Publisher · View at Google Scholar · View at Scopus
  43. S. Krishnan, K. Laskowski, V. Shukla, and E. B. Merewitz, “Mitigation of drought stress damage by exogenous application of a non-protein amino acid γ-aminobutyric acid on perennial ryegrass,” Journal of the American Society for Horticultural Science, vol. 138, no. 5, pp. 358–366, 2013. View at Google Scholar · View at Scopus