Genetic Analysis of Two Chicken Infectious Anemia Virus Variants-Related Gyrovirus in Stray Mice and Dogs: The First Report in China, 2015

Figure 3

SimPlot recombination analysis. (a) Similarity plot generated using the complete genome of CIAV-Dog as query sequence, GD-1-12 (purple) and AB119448 (black) as two parent groups. Kimura 2-parameter was used as distance model with a transition-transversion ratio of 2. The -axis refers to percentage identity with a sliding window size of 200 bp and with a step size of 20 bp between plots. The -axis represents the nucleotide positions in alignment. (b) Bootscanning analysis performed with CIAV-Dog as query sequence using a sliding window of 200 nt moving in 20 nt steps.

(a)

(b)