Complete Chloroplast Genome Sequence of Coptis chinensis Franch. and Its Evolutionary History

Table 2

List of genes in the C. chinensis chloroplast genome. Numbers in the parentheses indicate the copy number in the genome.

Groups	Name of genes
Biosynthesis of cofactors	ccsA
Cellular processes	clpP
Conserved hypothetical plastid	ycf1(2), ycf15(4), ycf2(2), ycf3, ycf4
Energy metabolism	atpA, atpB, atpE, atpF, atpH, atpI, ndhA, ndhB(2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK, petA, petB, petD, petG, petL, petN
Fatty acid metabolism	accD
Hypothetical or uncharacterized	infA, matK
Photosynthesis	psaA, psaB, psaC, psaI, psaJ, psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ,; rbcL
Ribosomal RNA	rrn16S(2), rrn23S(2), rrn4.5S(2), rrn5S(2)
Transcription	rpoA, rpoB, rpoC1, rpoC2
Translation	rpl14, rpl16, rpl2(2), rpl20, rpl22, rpl23(2), rpl32, rpl33, rpl36, rps11, rps12(3), rps14, rps15, rps16, rps18, rps19(2), rps2, rps3, rps4, rps7(2), rps8
Transporters	cemA
tRNA	trnC-GCA, trnD-GTC, trnE-TTC, trnF-GAA, trnG-GCC, trnI-CAT(2), trnL-CAA(2), trnL-TAG, trnM-CAT, trnN-GTT(2), trnP-TGG, trnQ-TTG,; trnR-ACG(2), trnR-TCT, trnS-GCT, trnS-GGA, trnS-TGA, trnT-GGT,; trnT-TGT, trnV-GAC(2), trnW-CCA, trnY-GTA, trnfM-CAT