Research Article
Complete Chloroplast Genome Sequence of Coptis chinensis Franch. and Its Evolutionary History
Table 3
Statistics of chloroplast SSRs detected in 24 species. p1, mononucleotide SSRs; p2, dinucleotide SSRs; p3, trinucleotide SSRs; c, compound SSRs; A, adenine; G, guanine; T, thymine; C, cytosine.
| Species | Total | p1 | p2 | p3 | c | All | (A)n | (C)n | (G)n | (T)n | All | (AT)n | (TA)n |
| E. pseudowushanense | 68 | 61 | 26 | 1 | 1 | 33 | 2 | 1 | 1 | 0 | 5 | E. lishihchenii | 73 | 67 | 26 | 1 | 1 | 39 | 2 | 1 | 1 | 0 | 4 | E. sagittatum | 63 | 55 | 22 | 1 | 1 | 31 | 2 | 1 | 1 | 0 | 6 | E. dolichostemon | 65 | 59 | 25 | 1 | 1 | 32 | 2 | 1 | 1 | 0 | 4 | E. acuminatum | 69 | 62 | 28 | 1 | 1 | 32 | 2 | 1 | 1 | 0 | 5 | E. koreanum | 68 | 60 | 26 | 1 | 1 | 32 | 2 | 2 | 0 | 0 | 6 | S. hexandrum | 33 | 27 | 10 | 0 | 1 | 16 | 2 | 2 | 0 | 0 | 4 | Nandina domestica | 52 | 48 | 19 | 0 | 0 | 29 | 1 | 0 | 1 | 0 | 3 | G. microrrhynchum | 71 | 59 | 26 | 1 | 0 | 32 | 1 | 0 | 1 | 1 | 10 | B. amurensis | 72 | 62 | 29 | 0 | 0 | 33 | 2 | 1 | 0 | 2 | 6 | B. koreana | 73 | 66 | 30 | 0 | 0 | 36 | 2 | 1 | 0 | 2 | 3 | B. bealei | 75 | 71 | 39 | 0 | 0 | 32 | 1 | 1 | 0 | 2 | 1 | R. macranthus | 32 | 28 | 13 | 0 | 0 | 15 | 3 | 3 | 0 | 1 | 0 | Clematis terniflora | 50 | 39 | 18 | 0 | 1 | 20 | 4 | 0 | 4 | 1 | 6 | Aconitum chiisanense | 34 | 21 | 9 | 2 | 0 | 10 | 10 | 4 | 6 | 0 | 3 | T. coreanum | 50 | 44 | 19 | 2 | 0 | 23 | 4 | 0 | 4 | 1 | 1 | M. saniculifolia | 38 | 36 | 10 | 0 | 0 | 26 | 2 | 2 | 0 | 0 | 0 | Coptis chinensis | 47 | 38 | 16 | 0 | 0 | 22 | 5 | 3 | 2 | 0 | 4 | Stephania japonica | 53 | 42 | 17 | 2 | 0 | 23 | 8 | 3 | 5 | 0 | 3 | Akebia trifoliata | 40 | 38 | 20 | 2 | 1 | 15 | 0 | 0 | 0 | 0 | 1 | P. somniferum | 16 | 16 | 8 | 0 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | Euptelea pleiosperma | 65 | 57 | 27 | 0 | 0 | 30 | 0 | 0 | 0 | 0 | 8 | L. chinense | 49 | 41 | 13 | 2 | 0 | 26 | 3 | 2 | 1 | 1 | 4 | L. tulipifera | 56 | 47 | 18 | 2 | 0 | 27 | 3 | 2 | 1 | 1 | 5 |
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