Research Article

A Bioinformatic Profile of Gene Expression of Colorectal Carcinoma Derived Organoids

Table 3

Gene ontology (GO) enrichment analysis of differentially expressed genes (DEGs) in tumor organoids. Genes’ enrichment of molecular function (MF).

CategoryGroupTermCountP-Value

GOTERM_MF_ALLUpregulagedsequence-specific double-stranded DNA binding (GO:1990837)14143.40E-05
transcription regulatory region sequence-specific DNA binding (GO:0000976)13139.60E-05
double-stranded DNA binding (GO:0003690)14149.80E-05
transcription factor activity, sequence-specific DNA binding (GO:0003700)16165.90E-04
nucleic acid binding transcription factor activity (GO:0001071)16166.00E-04
transcription regulatory region DNA binding (GO:0044212)13136.50E-04
regulatory region DNA binding (GO:0000975)13136.70E-04
regulatory region nucleic acid binding (GO:0001067)13136.80E-04
sulfur compound binding (GO:1901681)778.30E-04
RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981)11111.10E-03
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding (GO:0000982)881.20E-03
receptor binding (GO:0005102)17171.20E-03
RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)881.50E-03
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001227)661.50E-03
sequence-specific DNA binding (GO:0043565)14141.60E-03
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding (GO:0001078)551.90E-03
carbonate dehydratase activity (GO:0004089)331.90E-03
core promoter proximal region sequence-specific DNA binding (GO:0000987)882.00E-03
core promoter proximal region DNA binding (GO:0001159)882.10E-03
RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977)10102.10E-03
RNA polymerase II regulatory region DNA binding (GO:0001012)10102.20E-03
activating transcription factor binding (GO:0033613)442.80E-03
DNA binding (GO:0003677)23233.20E-03
metal ion binding (GO:0046872)32323.70E-03
ion binding (GO:0043167)33334.20E-03
cation binding (GO:0043169)32324.40E-03
RNA polymerase II activating transcription factor binding (GO:0001102)331.40E-02
kinase binding (GO:0019900)882.30E-02
hydro-lyase activity (GO:0016836)332.50E-02
carboxyl-O-methyltransferase activity (GO:0010340)223.30E-02
protein carboxyl O-methyltransferase activity (GO:0051998)223.30E-02
binding (GO:0005488)75753.80E-02
protein kinase binding (GO:0019901)774.00E-02
heparin binding (GO:0008201)444.00E-02
enzyme binding (GO:0019899)15154.10E-02
modified amino acid binding (GO:0072341)334.40E-02
carbon-oxygen lyase activity (GO:0016835)334.70E-02
alcohol binding (GO:0043178) )334.80E-02
Downregulatedcalcium ion binding (GO:00055093210.88.80E-08
growth factor binding (GO:0019838)113.72.10E-05
laminin binding (GO:0043236)51.79.50E-04
NADH pyrophosphatase activity (GO:0035529)312.10E-03
phospholipid binding (GO:0005543)144.72.50E-03
collagen binding (GO:0005518)622.60E-03
cytokine activity (GO:0005125)103.46.00E-03
fibronectin binding (GO:0001968)41.46.50E-03
metal ion binding (GO:0046872)80277.60E-03
extracellular matrix binding (GO:0050840)51.77.80E-03
sulfur compound binding (GO:1901681)103.48.10E-03
lipid binding (GO:0008289)196.49.10E-03
receptor antagonist activity (GO:0048019)319.10E-03
receptor binding (GO:0005102)3411.59.80E-03
heparin binding (GO:0008201)82.79.90E-03
cation binding (GO:0043169)80271.00E-02
calcium-dependent phospholipid binding (GO:0005544)51.71.10E-02
glycosaminoglycan binding (GO:0005539)931.30E-02
ion binding (GO:0043167)8227.71.30E-02
enzyme inhibitor activity (GO:0004857)134.41.40E-02
receptor inhibitor activity (GO:0030547)311.80E-02
nucleotide diphosphatase activity (GO:0004551)312.30E-02
transforming growth factor beta binding (GO:0050431)312.30E-02
metalloendopeptidase inhibitor activity (GO:0008191)312.30E-02
protein homodimerization activity (GO:0042803)196.42.40E-02
binding (GO:0005488)225762.60E-02
receptor regulator activity (GO:0030545)41.43.20E-02
actin binding (GO:0003779)124.13.50E-02
protein binding (GO:0005515)17559.13.60E-02
interleukin-1 receptor antagonist activity (GO:0005152)20.74.40E-02
fibroblast growth factor binding (GO:0017134)314.50E-02
cytoskeletal protein binding (GO:0008092)206.84.70E-02