Research Article
Analysis of the Cancer Genome Atlas Data Reveals Novel Putative ncRNAs Targets in Hepatocellular Carcinoma
Table 1
Top ten differentially expressed genes (DEGs) from total RNA-seq and microRNA RNA-seq.
| Total RNA-seq DEGs | Upregulated in tumor | Downregulated in tumor | Transcript | Fold change | Transcript | Fold change |
| SIRT1 | 15.32119 | PAPPA2 | -5.66486 | RPL28 | 11.29295 | TNR | -4.59590 | LINC0161 | 10.83190 | SNHG21 | -4.51615 | CACNB3 | 10.71749 | CALHM6 | -4.44294 | CREM | 10.54143 | LCMT1-AS | -4.39991 | GOLGA8B | 10.32588 | BHMT2 | -4.34723 | SLC46A2 | 10.16996 | PRDM1 | -4.33354 | LINC0044 | 10.10149 | CPLX4 | -4.29631 | NUP85 | 9.78697 | PTP4A2 | -4.06166 | CFAP44-AS | 9.67638 | GEMIN4 | -3.99574 |
| DE miRNAs | Upregulated in tumor | Downregulated in tumor | Transcript | Fold change | Transcript | Fold change |
| hsa-mir-767 | 8.99037 | hsa-mir-490 | -3.58293 | hsa-mir-105-2 | 8.90799 | hsa-mir-4686 | -3.40137 | hsa-mir-891a | 8.86653 | hsa-mir-1258 | -2.95466 | hsa-mir-105-1 | 8.19189 | hsa-mir-139 | -2.00361 | hsa-mir-3923 | 7.94124 | hsa-mir-424 | -1.96325 | hsa-mir-520f | 7.91529 | hsa-mir-4683 | -1.94045 | hsa-mir-520c | 7.63784 | hsa-mir-934 | -1.92190 | hsa-mir-518e | 7.37922 | hsa-mir-130a | -1.86453 | hsa-mir-520b | 7.17289 | hsa-mir-873 | -1.84610 | hsa-mir-520a | 7.00665 | hsa-mir-6503 | -1.76457 |
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