Genetic Diversity of Aromatic Rice Germplasm Revealed By SSR Markers

Table 2

Selected polymorphic simple sequence repeat markers.

Sl. no.	SSR marker	Sequence	Tem (°C)	Chr. no.
(1)	RM1	F: 5′-GCGAAAACACAATGCAAAAA -3′	55	1
		R: 5′-GCGTTGGTTGGACCTGAC-3′
(2)	RM23	F: 5′-CATTGGAGTGGAGGCTGG-3′	55	1
		R: 5′-GTCAGGCTTCTGCCATTCTC-3′
(3)	RM38	F: 5′- ACGAGCTCTCGATCAGCCTA-3′	55	8
		R: 5′- TCGGTCTCCATGTCCCAC-3′
(4)	RM108	F: 5′-TCTCTTGCGCGCACACTGGCAC-3′	67	9
		R: 5′-CGTGCACCACCACCACCACCAC-3′
(5)	RM114	F: 5′-CAGGGACGAATCGTCGCCGGAG-3′	55	3
		R: 5′-TTGGCCCCCTTGAGGTTGTCGG-3′
(6)	RM159	F: 5′-GGGGCACTGGCAAGGGTGAAGG-3′	55	5
		R: 5′-GCTTGTGCTTCTCTCTCTCTCTCTCTCTC-3′
(7)	RM165	F: 5′-CCGAACGCCTAGAAGCGCGTCC-3′	67	1
		R: 5′-CGGCGAGGTTTGCTAATGGCGG-3′
(8)	RM169	F: 5′-TGGCTGGCTCCGTGGGTAGCTG -3′	67	5
		R: 5′-TCCCGTTGCCGTTCATCCCTCC-3′
(9)	RM172	F: 5′-TGCAGCTGCGCCACAGCCATAG-3′	55	7
		R: 5′- CAACCACGACACCGCCGTGTTG-3′
(10)	RM195	F: 5′-AGAAAGAGAGGCCGTCGGCGGC-3′	61	8
		R: 5′-GGGCTCACCCCCAAACCTGCAG-3′
(11)	RM250	F: 5′- GGTTCAAACCAAGCTGATCA-3′	55	2
		R: 5′- GATGAAGGCCTTCCACGCAG-3′
(12)	RM256	F: 5′-GACAGGGAGTGATTGAAGGC-3′	55	8
		R: 5′-GTTGATTTCGCCAAGGGC-3′
(13)	RM285	F: 5′-CTGTGGGCCCAATATGTCAC-3′	55	9
		R: 5′-GGCGGTGACATGGAGAAAG-3′
(14)	RM288	F: 5′-CCGGTCAGTTCAAGCTCTG-3′	55	9
		R: 5′-ACGTACGGACGTGACGAC-3′
(15)	RM291	F: 5′-GTTGCACTACGTATTCTGAG-3′	55	5
		R: 5′-GATCCAGATAAATGAGGCAC-3′
(16)	RM294	F: 5′-TTGGCCTAGTGCCTCCAATC-3′	55	1
		R: 5′-GAGGGTACAACTTAGGACGCA-3′
(17)	RM311	F: 5′-TGGTAGTATAGGTACTAAACAT-3′	55	10
		R: 5′-TCCTATACACATACAAACATAC-3′
(18)	RM314	F: 5′-CTAGCAGGAACTCCTTTCAGG-3′	55	6
		R: 5′-AACATTCCACACACACACGC
(19)	RM321	F: 5′-CCAACACTGCCACTCTGTTC-3′	55	9
		R: 5′-GAGGATGGACACCTTGATCG-3′
(20)	RM327	F: 5′-CTACTCCTCTGTCCCTCCTCTC-3′	55	2
		R: 5′-CCAGCTAGACACAATCGAGC-3′
(21)	RM332	F: 5′-GCGAAGGCGAAGGTGAAG -3′	55	11
		R: 5′-CATGAGTGATCTCACTCACCC-3′
(22)	RM342	F: 5′-CCATCCTCCTACTTCAATGAAG-3′	55	8
		R: 5′-ACTATGCAGTGGTGTCACCC-3′
(23)	RM434	F: 5′-GCCTCATCCCTCTAACCCTC-3′	55	9
		R:5′-CAAGAAAGATCAGTGCGTGG-3′
(24)	RM460	F: 5′-TGATCGACAGCGTTCTTGAC-3′	55	9
		R: 5′-GCCTGGCCCACATAATTAAG-3′
(25)	RM469	F: 5′-AGCTGAACAAGCCCTGAAAG-3′	55	6
		R: 5′-GACTTGGGCAGTGTGACATG-3′
(26)	RM3134	F: 5′-GCAGGCACAAAAGCAAAGAG-3′	50	3
		R: 5′-AGGTGAAGGTGCATTGTGTG-3′
(27)	RM3872	F: 5′-GGAAGAAAGGATCTATATCA-3′	55	3
		R:5′-TACGATTTGTTTAAGTTCAA-3′
(28)	RM6250	F: 5′-AACCTACGTTACCCTGCACG-3′	50	4
		R: 5′-GGCTCATGAGTTTCAGAGGC-3′
(29)	RM7376	F: 5′-TCACCGTCACCTCTTAAGTC-3′	50	12
		R: 5′-GGTGGTTGTGTTCTGTTTGG-3′
(30)	RM10022	F: 5′-CCTCCATAGAGTAAGGTTTGCATGG-3′	50	1
		R: 5′-CCTCCTCCTCTGTCTTTCTCTGC-3′
(31)	RM16655	F: 5′-CCTTGGAAGCTGGAACTTCACC-3′	50	4
		R: 5′-GGCTCTTAGGTTAGATCCCACACG-3′
(32)	RM23835	F: 5′-TTCCGCTGTTTCTCTTCTTGTGC-3′	50	9
		R: 5′-CTGGTTCTGCTGGTTCTGTAGTTGG-3′