Genetic Diversity of Aromatic Rice Germplasm Revealed By SSR Markers

Table 3

Allelic diversity as revealed by 32 polymorphic SSR markers.

Sl. no.	Marker	Number of alleles	Expected heterozygosity	PIC	Effective no. of alleles	Nei’s index	Shannon’s index
(1)	RM1	5	0.35	0.87	1.91	0.98	0.84
(2)	RM23	6	0.01	0.76	1.57	0.36	0.67
(3)	RM38	5	0.37	0.46	1.70	0.27	0.47
(4)	RM108	4	0.51	0.45	1.62	0.38	0.74
(5)	RM114	5	0.68	0.58	1.09	0.43	0.73
(6)	RM159	6	0.53	0.78	1.99	0.50	0.69
(7)	RM165	5	0.77	0.40	1.53	0.35	0.53
(8)	RM169	3	0.73	0.47	1.65	0.39	0.58
(9)	RM172	3	1.13	0.99	1.05	0.05	0.53
(10)	RM195	3	0.67	0.91	1.72	0.42	0.91
(11)	RM250	4	0.56	0.35	0.97	0.22	0.64
(12)	RM256	3	0.36	0.51	1.52	0.47	0.60
(13)	RM285	4	0.50	0.25	0.98	0.19	0.53
(14)	RM288	3	0.48	0.40	1.54	0.35	0.66
(15)	RM291	4	0.79	0.54	1.76	0.43	0.76
(16)	RM294	4	0.59	0.93	1.64	0.39	0.58
(17)	RM311	4	0.59	0.76	1.99	0.50	0.69
(18)	RM314	5	0.71	0.76	1.74	0.38	0.48
(19)	RM321	4	0.44	0.98	1.35	0.26	0.42
(20)	RM327	5	0.53	0.49	1.24	0.46	0.51
(21)	RM332	3	0.44	0.37	1.49	0.33	0.51
(22)	RM342	5	0.67	0.74	1.08	0.13	0.60
(23)	RM460	3	0.94	0.30	1.12	0.11	0.22
(24)	RM462	7	0.75	0.75	1.76	0.28	0.32
(25)	RM469	3	0.55	0.70	1.98	0.50	0.69
(26)	RM3134	3	0.48	0.78	2.12	0.70	0.82
(27)	RM3872	2	0.45	0.25	1.29	0.23	0.47
(28)	RM6250	4	0.55	0.79	1.84	0.37	0.41
(29)	RM7376	3	0.95	0.89	0.89	0.13	0.61
(30)	RM10022	4	0.67	0.55	1.63	0.34	0.54
(31)	RM16655	5	0.70	0.64	0.10	0.32	0.45
(32)	RM23835	4	0.85	0.35	1.36	0.41	0.37
Total no. of alleles: 131
Mean		4.09	0.60	0.63	1.48	0.36	0.58