Development of Clustered Resistance Gene Analogs-Based Markers of Resistance to Phytophthora capsici in Chili Pepper

Table 1

Information about the molecular markers within the extended major QTL region on chromosome 5.

Marker	QTL	Genome location (Mbp)	Primer sequences		References
			Forward primer (5′-3′)	Reverse primer (5′-3′)
U196349	HV Pc5.3	6.17	CCTGGGAGAGGAGTCCTACA	GCAAGAAACAGCGCCTTTAG	[40]
U198114	HV Pc5.3	11.35	TTGGGCTCAATTAAACCATACA	GCACCCCTTGATTGAGAGAA	[40]
CA_036100^†	EC Pc5.1	14.79	GTATATATTTATCAAAATTAATAATCTAGAGAGTATTGAGAGTG­CTTAGTGAGAGAGATTAGCAAATTAGCAACAATGGGTAAATTGATTTTTGTAGCAAT		[44]
U197890	PY Pc5.3	14.93	CCATATGGTCCTCCTCCAGA	CTTTCAACCACTTCGGCAAT	[40]
CONTIG1896	Phyto5	19.99	CATAACACAACCCAATTGCAGAACC	GTCCTACACTTGTTACAGCTGCC	[43]
CA_028982^†	EC Pc5.1	20.02	GTGGAGGACGAATGTGGTATTTCTCAACCCCAACAAAGAGAAAAAAAACACGTAAAAATAATTTTGAGGAACTAAGGATAAGAAATGCAACAATGGAAGGC		[44]
CaNB-5390		20.2	AAGCCGGGTCTTATAAACTTCCAT	CTTGTGAACATCCAAAGTTAGGGG	In this study
CaNB-5410		20.25	TAGAATCCATCAACCGTACGTAGA	ATTGAGTTAGGTGGCATCTTGACT	In this study
CaNB-5440		20.3	GTTCGACGAGGCTCTACTTTGA	TCAGTCTGCCAGGATTAACAATGA	In this study
CaNB-5480		20.51	TCGAAATCAATACTCCTCCTTCCC	CTCACGCGTTGTTCTTAAAAGGTT	In this study
CAMS319	MC Pc5.1	20.57	CATAACACAACCCAATTGCAGAACC	CATAACACAACCCAATTGCAGAACC	[45]
CaNB-5500		20.79	TCATTTATGCGTGCAGTATCGTAC	AAATATACCCCTCAATGACACACA	In this study
CaNB-5720		22.5	GGAAGTCCATTTTATCTATCCTCAGA	ATGATTTTGGGGGATTTCAATAGT	In this study
907783	Phyto5	23.78	GACTCCATTTTCATGTTAGCGTGC	CTTGCACCTGGTAAACAACGC	[43]
CaRP-5130		26.43	GACACATTTTGCAGATTCATCAAC	CACCCAAAAAGGTAAAAAGAAACA	In this study
CONTIG1820	Phyto5	26.44	GCAAGGAGAAATCAACAGAGCC	AATACAAAGAACGCAGTAGGAGGG	[43]
CaNB-5330		27.63	AAGAAAGCCGTCACCTTCATAGAT	GCTAATTTGCAAGGATTACGCTCA	In this study
CaRK-5470		28.5	TTTCAATATCCAAAGAACACAACA	GTGAACCCAATGTGATAGTGAAAG	In this study
Phyto5SAR	Phyto5	29.29	GGCACAACAATAGTCACAACGG	GAGACTAAGAAAGTTGGACGCC	[43]
CaNB-5530		30.19	GCTCCGTGTTCATCTATGTTAAACA	AACAGAAGGATCCATCAGCATCAT	In this study
CAMS420	MC Pc5.1	32.04	CATAACACAACCCAATTGCAGAACC	CATAACACAACCCAATTGCAGAACC	[45]
142964		32.29	AAAGCTTTTTACATCTCATTCAACG	AGTTTGAGCAACATAGATGTGGAG	[42]
CaNB-5170		34.56	TATCTCCTACATCCCACTGACAAC	CTTGTCATGGGTGGTGCATTAATG	In this study
Sn-2	HV Pc5.2	47.72	TTCGATCCACACCATCATCT	TCCTTCAATGGCTTTCCATC	[40]
P5-SNAP-CM	CC Pc5.2	139.2	TCATGAGGTTGCTATTAAGATTGGTCCTGTTATATA	CATAGAAAGGGATATCATCTGGTACATGCAGAAA	[41]

Table 1 contains information about newly developed markers and several representative markers among the 31 previously developed markers. ^†Primers for CA_036100 and CA_028982 are flanking sequences of CM334.