| | Category | Group of genes | Name of genes |
| | RNA genes | ribosomal RNA genes (rRNA) | rrn5, rrn4.5, rrn16, rrn23 |
| | | Transfer RNA genes (tRNA) | trnH-GUG, trnK-UUU+, trnQ-UUG, trnS-GCU, trnS-CGA+, trnR-UCU,trnC-GCA, trnD-GUC, trnY-GUA, trnE-UUC, trnT-GGU, trnS-UGA, trnfM-CAU, trnG-GCC, trnS-GGA, trnL-UAA+, trnT-UGU, trnF-GAA, trnV-UAC+, trnM-CAU, trnW-CCA, trnP-UGG, trnI-, trnL-, trnV-, trnI-, trnA-, trnR-, trnN-, trnL-UAG, |
| | Ribosomal proteins | Small subunit of ribosome | rps2, rps3, rps4, , rps8, rps11, , rps14, rps15, rps,16+, rps18,rps19 |
| | Transcription | Large subunit of ribosome | , rpl14, rpl16, rpl20, rpl22, , rpl32, rpl33, rpl36 |
| | | DNA dependent RNA polymerase | rpoA, rpoB, rpoC1+, rpoC2 |
| | Protein genes | Photosystem I | psaA, psaB, psaC, psaI,psaJ,ycf3++ |
| | | Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ |
| | | Subunit of cytochrome | petA, petB, petD, petG, petL, petN |
| | | Subunit of synthase | atpA, atpB, atpE, atpF+, atpH, atpI |
| | | Large subunit of rubisco | rbcL |
| | | NADH dehydrogenase | ndhA+,, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK |
| | | ATP dependent protease subunit P | clpP++ |
| | | Chloroplast envelope membrane protein | cemA |
| | Other genes | Maturase | matK |
| | | Subunit acetyl-coA carboxylase | accD |
| | | C-type cytochrome synthesis | ccsA |
| | | Hypothetical proteins | , ycf4, |
| | | Component of TIC complex | |
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