Research Article

GAAP: A Genome Assembly + Annotation Pipeline

Table 18

EVM partitioning command.

EvmUtils/partition_EVM_inputs.pl --genome genome.fasta
--gene_predictions gene_predictions.gff3 --protein_alignments protein_alignment.gff3
--transcript_alignments transcript_alignment.gff3
--segmentSize 100000 --overlapSize 10000 --partition_listing partitions_list.out