GAAP: A Genome Assembly + Annotation Pipeline

Table 4

SOAPdenovo configuration file.

---

max_rd_len=101

avg_ins=170

reverse_seq=0

asm_flags=3

rank=1

q1=DNAread170_1.fastq

q2=DNAread170_2.fastq

max_rd_len=101

avg_ins=2900

reverse_seq=1

asm_flags=2

rank=2

q1=DNAread2900_1.fastq

q2=DNAread2900_2.fastq

---