Integrated Analysis of mRNA Expression, CpG Island Methylation, and Polymorphisms in the MITF Gene in Ducks (Anas platyrhynchos)
Table 3
Genotype distribution and genetic polymorphisms of the duck MITF gene.
SNP position
Breed
Genotype frequency (number of birds)
Allele frequency
PIC
CC
CT
TT
C
T
g.312C>T
PTB
0.35 (39)
0.54 (61)
0.11 (12)
0.621
0.379
0.360
PTW
0.99 (106)
0.01 (1)
0 (0)
0.995
0.005
0.009
LC
0.87 (93)
0.13 (14)
0 (0)
0.935
0.065
0.115
LS
0.44 (47)
0.46 (49)
0.09 (10)
0.675
0.325
0.343
g.32813G>A
GG
GA
AA
G
A
PTB
0.36 (40)
0.51 (57)
0.13 (15)
0.612
0.388
0.362
PTW
1.00 (107)
0 (0)
0 (0)
1.000
0.000
0.000
LC
0 (0)
0.11 (12)
0.89 (95)
0.056
0.944
0.100
LS
0.78 (83)
0.21 (22)
0.01 (1)
0.887
0.113
0.181
g.39807T>G
TT
TG
GG
T
G
PTB
0 (0)
0.03 (3)
0.97 (109)
0.013
0.987
0.026
PTW
0.79 (85)
0.19 (20)
0.02 (2)
0.888
0.112
0.179
LC
0.02 (2)
0 (0)
0.98 (105)
0.019
0.981
0.036
LS
0 (0)
0.01 (1)
0.99 (105)
0.005
0.995
0.009
g.40862G>A
GG
GA
AA
G
A
PTB
0 (0)
0.02 (2)
0.98 (110)
0.009
0.991
0.018
PTW
0.86 (92)
0.12 (13)
0.02 (2)
0.921
0.079
0.136
LC
0 (0)
0 (0)
1.00 (107)
0.000
1.000
0.000
LS
0 (0)
0.17 (18)
0.83 (88)
0.085
0.915
0.143
Note. PTB means Putian Black duck (N = 112), PTW means Putian White duck (N = 107), LC means Liancheng White duck (N = 107), and LS means Longsheng Jade-green duck (N = 106). PIC means polymorphism information content. PIC < 0.25 indicates a low level of polymorphism, 0.25 < PIC < 0.5 indicates a medium level of polymorphism, and PIC > 0.5 indicates a high level of polymorphism.
