Analysis of Expression and Single Nucleotide Polymorphisms of INHA Gene Associated with Reproductive Traits in Chickens
Table 4
Genotypic and allele frequencies and the genetic information of SNP sites of the chicken INHA gene.
SNPs
Genotype frequency (%)
Allele frequency (%)
PIC
P-value
SNP1
CC
CT
TT
C
T
C22176805 T
31.03
61.21
7.76
61.635
38.365
0.3611
P=0.0068
SNP2
TT
TC
CC
T
C
T22176870C
35.35
55.17
9.48
62.935
37.065
0.3577
P=0.0821
SNP3
TT
TC
CC
T
C
T22177100C
37.07
54.31
8.62
64.225
35.775
0.3539
P=0.0835
SNP4
TT
TC
CC
T
C
T22177149C
34.49
56.03
9.48
62.505
37.495
0.3589
P=0.0835
SNP5
AA
AG
GG
A
G
A22177991G
10.34
52.59
37.07
36.635
63.365
0.3565
P=0.235
SNP6
GG
GC
CC
G
C
G22178249C
13.80
55.17
31.03
41.385
58.615
0.3675
P=0.2132
SNP7
GG
GA
AA
G
A
G22178414A
30.17
56.03
13.80
58.185
41.815
0.3682
P=0.1611
SNP8
TT
TC
CC
T
C
T22178618C
31.03
55.17
13.80
58.615
41.385
0.3675
P=0.2132
SNP9
AA
AT
TT
A
T
A22178681T
31.03
55.17
13.80
58.615
41.385
0.3675
P=0.2132
SNP10
CC
CT
TT
C
T
C22178728T
14.66
55.17
30.17
42.245
57.755
0.3689
P=0.2403
SNP11
AA
AG
GG
A
G
A22178835G
12.94
56.03
31.03
40.955
59.045
0.3667
P=0.2132
SNP12
GG
GA
AA
G
A
G22178975A
19.83
57.76
22.41
48.71
51.29
0.3748
P=0.1467
P-value is the result of test of Hardy-Weinberg equilibrium; PIC < 0.25 indicated low polymorphism, 0.25 < PIC < 0.50 indicated intermediate polymorphism, and PIC > 0.50 indicated high polymorphism.
