Research Article
Microarray Normalization Revisited for Reproducible Breast Cancer Biomarkers
Table 2
Impact of data processing pipeline on percent misclassification of hormone receptor status.
| | Hormone receptor status prediction: percent misclassification | | Receptor | # | A | B | C | D | E | F | G | H | I | J | K | L | M | N |
| | ER | 3 | 5.4 | 3.3 | 3.7 | 1.6 | 3.8 | 0.3 | 1.4 | 2.9 | 0.8 | 1.5 | 1.6 | 15.6 | 2.8 | 2.7 | | PGR | 3 | 10.9 | 7.9 | 8.1 | 4.8 | 8.8 | 0.7 | 4.8 | 6.8 | 2.2 | 2.7 | 2.0 | 21.6 | 7.1 | 7.3 | | HER2 | 3 | 8.0 | 6.5 | 5.3 | 4.7 | 7.1 | 0.4 | 3.1 | 6.7 | 2.2 | 2.5 | 2.0 | 11.7 | 6.4 | 7.0 | | Average | | 8.1 | 5.9 | 5.7 | 3.7 | 6.6 | 0.4 | 3.1 | 5.4 | 1.8 | 2.3 | 1.8 | 16.3 | 5.4 | 5.7 |
|
|
