Characteristic and Phylogenetic Analysis of the Complete Chloroplast Genomes of Three Medicinal Plants of Schisandraceae

Table 2

Lists of genomic genes of S. chinensis, S. sphenanthera, and K. coccinea.

Genes	S. chinensis	S. sphenanthera	K. coccinea
Group of genes	Gene name	Gene name	Gene name
Ribosomal RNAs	rRNA23,16^d, 5, 4.5	rRNA23, 16, 5, 4.5	rRNA23, 16, 5, 4.5
Transfer RNAs	trnH-GUG, trnK-UUU^d, trnQ-UUG, trnS-GCU, trnG-GCC, trnG-GCC^d, trnR-UCU, trnC-GCA, trnD-GUC, trnY-GUA, trnE-UUC, trnT-GGU, trnS-UGA, trnG-UCC, trnM-CAU, trnS-GCU, trnT-UGU, trnL-UAA^d, trnF-GAA, trnV-UAC^d, trnM-CAU, trnW-CCA, trnP-UGG, trnI-CAU, trnV-GAC^d, trnM-CAU, trnW-CCA, trnP-UGG, trnI-CAU, trnV-GAC, trnI-GAU^d, trnA-UGC^d, trnR-ACG, trnN-GUU, trnL-UAG, trnN-GUU, trnR-ACG, trnA-UGC^d, trnI-GAU^d, trnV-GAC	trnH-GUG, trnK-UUU^d, trnQ-UUG, trnS-GCU, trnG-GCC, trnG-GCC^d, trnR-UCU, trnC-GCA, trnD-GUC, trnY-GUA, trnE-UUC, trnT-GGU, trnS-UGA, trnG-UCC, trnM-CAU, trnS-GCU, trnT-UGU, trnL-UAA^d, trnF-GAA, trnV-UAC^d, trnM-CAU, trnW-CCA, trnP-UGG, trnI-CAU, trnV-GAC^d, trnM-CAU, trnW-CCA, trnP-UGG, trnI-CAU, trnV-GAC, trnI-GAU^d, trnA-UGC^d, trnR-ACG, trnN-GUU, trnL-UAG, trnN-GUU, trnR-ACG, trnA-UGC2, trnI-GAU^d, trnV-GAC	trnH-GUG, trnK-UUU^d, trnQ-UUG, trnS-GCU, trnG-GCC, trnG-GCC^d, trnR-UCU, trnC-GCA, trnD-GUC, trnY-GUA, trnE-UUC, trnT-GGU, trnS-UGA, trnG-UCC, trnM-CAU, trnS-GCU, trnT-UGU, trnL-UAA^d, trnF-GAA, trnV-UAC^d, trnM-CAU, trnW-CCA, trnP-UGG, trnI-CAU, trnV-GAC^d, trnM-CAU, trnW-CCA, trnP-UGG, trnI-CAU, trnV-GAC, trnI-GAU^d, trnA-UGC^d, trnR-ACG, trnN-GUU, trnL-UAG, trnN-GUU, trnR-ACG, trnA-UGC^d, trnI-GAU^d, trnV-GAC
Proteins of small ribosomal subunits	rps2, 3, 4, 7^d, 8, 11, 12^d, 14, 15, 16, 18, 19,	rps2, 3, 4, 7^d, 8, 11, 12^d, 14, 15, 16, 18, 19,	rps2, 3, 4, 7^d, 8, 11, 12^d, 14, 15, 16, 18, 19,
Proteins of large ribosomal subunits	rpl14, 16, 2, 20, 22, 23, 32, 33, 36	rpl14, 16, 2, 20, 22, 23, 32, 33, 36	rpl14, 16, 2, 20, 22, 23, 32, 33, 36
Subunits of RNA polymerase	rpoA, B, C1, C2	rpoA, B, C1, C2	rpoA, B, C1, C2
Subunits of NADH dehydrogenase	ndhA, B^d, C, D, E, F, G, H, I, J, K	ndhA, B^d, C, D, E, F, G, H, I, J, K	ndhA, B^d, C, D, E, F, G, H, I, J, K
Subunits of photosystem I	psaA, B, C, I, J	psaA, B, C, I, J	psaA, B, C, I, J
Subunits of photosystem II	PsbA, B, C, E, D, F, H, I, J, K, L, N, T, Z	PsbA, B, C, E, D, F, H, I, J, K, N, T, Z	PsbA, B, C, E, D, F, H, I, J, K, N, T, Z
Large subunit of Rubisco	rbcL	rbcL	rbcL
Subunits of cytochrome b/f complex	petA, B, D, G	petA, B, D, G	petA, B, D, G
Subunits of ATP synthase	atpA, B, E, F, H, I	atpA, B, E, F, H, I	atpA, B, E, F, H, I
Acetyl-CoA carboxylase	accD	accD	accD
C-type cytochrome synthesis gene	ccsA	ccsA	ccsA
Maturase	matK	matK	matK
Protease	clpP^d	clpP^d	clpP^d
Envelope membrane protein	cemA	cemA	cemA
Conserved hypothetical chloroplast reading frames	ycf1, 2, 3, 4	ycf1, 2, 3, 4	ycf1, 2, 3, 4
Translational initiation factor	infA	infA	infA

d: indicates that there is a double-segment gene.