Identification of Latent Oncogenes with a Network Embedding Method and Random Forest

Table 1

Top fifteen inferred oncogenes.


Rank	Ensembl ID	Gene symbol	Description	Level value

1	ENSP00000304565	RAB31	RAB31, member RAS oncogene family	0.9105
2	ENSP00000421799	ENSG00000257184	—	0.8868
3	ENSP00000469872	RAB4B-EGLN2	RAB4B-EGLN2 Readthrough (NMD candidate)	0.8500
4	ENSP00000283921	HOXA10	Homeobox A10	0.8289
5	ENSP00000385586	HOXD12	Homeobox D12	0.8184
6	ENSP00000348429	ACSL5	Acyl-CoA synthetase long chain family member 5	0.8184
7	ENSP00000256953	RERG	RAS-like estrogen regulated growth inhibitor	0.8105
8	ENSP00000341032	WNT7B	Wnt family member 7B	0.8053
9	ENSP00000321805	RIT2	Ras like without CAAX 2	0.7763
10	ENSP00000285735	RHOC	Ras homolog family member C	0.7763
11	ENSP00000282397	FLT1	Fms related receptor tyrosine kinase 1	0.7763
12	ENSP00000264711	DNAJC27	DnaJ heat shock protein family (Hsp40) member C27	0.7737
13	ENSP00000339787	ACSL4	Acyl-CoA synthetase long chain family member 4	0.7737
14	ENSP00000357306	RIT1	Ras like without CAAX 1	0.7684
15	ENSP00000301068	RHEBL1	RHEB like 1	0.7684