|
| Name | Year | Functions | Database links | Last updated | Refs. |
|
| Circ2Traits | 2013 | A database for circRNAs with potential disease association, observed from GWAS-associated SNPs and potential interactions with miRNAs | http://gyanxet-beta.com/circdb/
https://github.com/shaoli86/circ2Traits | 11-18-2019 | [131] |
| circBase | 2014 | A web server-based database for circRNAs | http://circbase.org/ | 12-15-2015 | [132] |
| SomaniR v2.0 | 2016 | A database of cancer somatic mutation in miRNA and target sites to interact with miRNAs or circRNAs and mRNAs | http://compbio.uthsc.edu/SomamiR/ | NA | [198] |
| CircNet | 2016 | A database providing resources of novel circRNAs, integrated miRNA-target network, expression, annotations, and sequences of circRNA isoforms | http://circnet.mbc.nctu.edu.tw/ (NA)
https://omictools.com/circnet-tool | NA | [146] |
| circRNADb | 2016 | A circRNA database containing >32k human exonic circRNAs | http://reprod.njmu.edu.cn/cgi-bin/circrnadb/circRNADb.php | 03-03-2016 | [147] |
| TSCD | 2017 | An integrated database (tissue-specific circRNA database) to deposit features of tissue-specific circRNAs | http://gb.whu.edu.cn/TSCD/ | NA | [148] |
| CIRCpedia v2 | 2018 | An updated database for comprehensive circRNA annotation from >180 RNA-seq datasets | https://www.picb.ac.cn/rnomics/circpedia/
https://www.picb.ac.cn/rnomics/circpedia_v1/ | 07-07-2018 | [149] |
| CircR2Disease | 2018 | A curated database for circRNAs which is experimentally supported | http://bioinfo.snnu.edu.cn/CircR2Disease/ (NA) | 03-31-2018 | [150] |
| exoRBase | 2018 | A database of circRNAs, lncRNAs, and mRNAs from RNA-seq data of human blood exosomes | http://www.exorbase.org/ | 07-2017 | [151] |
| TRCirc | 2018 | A database for providing information on transcriptional regulation of circRNAs | http://www.licpathway.net/TRCirc/view/index | NA | [152] |
| CircRNAdisease | 2018 | A curated database of circRNAs and disease association | http://cgga.org.cn:9091/circRNADisease/ | 04-27-2018 | [153] |
| Circbank | 2019 | A database of human circRNAs from different sources | http://www.circbank.cn/ | NA | [154] |
| CircFunBase | 2019 | A database with functional circRNA resources including predicted functions that have been experimentally validated | http://bis.zju.edu.cn/CircFunBase/ | 10-08-2019 | [155] |
| LncACTdb 2.0 | 2019 | A database of endogenous RNAs including circRNAs | http://www.bio-bigdata.net/LncACTdb/ | NA | [156] |
| CropCircDB | 2019 | A circRNA database for crops in response to abiotic stress | http://genome.sdau.edu.cn/crop/
http://deepbiology.cn/crop/ | 05-10-2018 | [157] |
| AtCircDB | 2019 | A tissue-specific database for Arabidopsis circRNAs | http://genome.sdau.edu.cn/circRNA (NA) | NA | [158] |
| MiOncoCirc | 2019 | A most comprehensive database of cancer-based circRNAs, providing a reference of circRNAs from cancer cell lines and tumor tissues | https://mioncocirc.github.io/ | NA | [23, 199] |
| Circad | 2020 | A curated database of circRNAs associated with diseases | http://clingen.igib.res.in/circad/ | NA | [144] |
| ncrpheno | 2020 | A database that integrates and annotates ncRNA-disease association data | http://lilab2.sysu.edu.cn/ncrpheno (NA) | NA | [159] |
| NPInter v4 | 2020 | An integrated database of nvRNA interaction, including circRNA interaction | http://bigdata.ibp.ac.cn/npinter4 | 09-2019 | [160] |
| CircAtlas 2.0 | 2020 | An integrated database that contains >1 million highly reliable circRNAs in vertebrates | http://circatlas.biols.ac.cn/ | 03-30-2020 | [161] |
| VirusCircBase | 2020 | A database of virus circRNAs, providing fundamental atlas for further study | http://www.computationalbiology.cn/ViruscircBase/home.html | 01-30-2020 | [162] |
|
