Identification and Characterization of MAPK Signaling Pathway Genes and Associated lncRNAs in the Ileum of Piglets Infected by Clostridium perfringens Type C

Table 1

List of 38 DEGs in the ileum of C. perfringens type C-infected piglets and involved in the MAPK signaling pathway.

Transcript_id	Gene_id	Gene_name	Gene_location	IR_FPKM	IS_FPKM	IC_FPKM	IR/IS vs. IC
ENSSSCT00000014692	ENSSSCG00000013448	MKNK2	chr2	43.4911	46.414	28.5315	Up
ENSSSCT00000008273	ENSSSCG00000007541	PDGFA	chr3	14.9183	14.7878	8.5737	Up
ENSSSCT00000018048	ENSSSCG00000016578	FLNC	chr18	10.0504	6.34368	2.87348	Up
ENSSSCT00000010506	ENSSSCG00000009585	GADD45G	chr14	7.62666	9.57734	3.91102	Up
ENSSSCT00000035948	ENSSSCG00000000087	TAB1	chr5	16.5275	16.4673	6.57216	Up
ENSSSCT00000011362	ENSSSCG00000010380	MAPK8	chr14	21.0525	21.908	12.6966	Up
ENSSSCT00000006417	ENSSSCG00000005838	TRAF2	chr1	32.5992	41.5492	14.3483	Up
ENSSSCT00000005604	ENSSSCG00000005084	PPM1A	chr1	51.8059	43.5237	34.3071	Up
ENSSSCT00000017223	ENSSSCG00000015815	FGFR1	chr15	3.73792	3.84521	1.81799	Up
ENSSSCT00000036577	ENSSSCG00000014047	FGFR4	chr2	7.0379	7.28958	4.54589	Up
ENSSSCT00000035592	ENSSSCG00000012825	IKBKG	chrX	13.0762	13.1377	6.17629	Up
ENSSSCT00000027163	ENSSSCG00000024182	TRADD	GL896501.1	15.9912	18.1558	9.28888	Up
ENSSSCT00000011849	ENSSSCG00000010831	DUSP10	chr10	7.38813	6.74121	13.1549	Down
ENSSSCT00000006665	ENSSSCG00000006074	STK3	chr4	13.542	12.914	22.2968	Down
ENSSSCT00000019500	ENSSSCG00000017918	ARRB2	chr12	19.7007	16.6525	33.5934	Down
ENSSSCT00000011433	ENSSSCG00000010448	FAS	chr14	11.263	8.86748	19.0862	Down
ENSSSCT00000032467	ENSSSCG00000022284	DUSP6	GL894700.2	34.9735	42.5184	66.7146	Down
ENSSSCT00000008863	ENSSSCG00000008090	IL1A	chr3	0.997492	0.699335	2.9188	Down
ENSSSCT00000028838	ENSSSCG00000025182	ELK4	chr9	29.0925	28.1354	68.2787	Down
ENSSSCT00000010840	ENSSSCG00000009890	MAPKAPK5	chr14	18.5275	17.6704	31.6075	Down
ENSSSCT00000015453	ENSSSCG00000014149	MEF2C	chr2	37.5795	33.6784	73.2693	Down
ENSSSCT00000002650	ENSSSCG00000002383	FOS	chr7	9.18142	9.4395	18.8033	Down
ENSSSCT00000012777	ENSSSCG00000011672	RASA2	chr13	15.7766	14.1345	27.9444	Down
ENSSSCT00000006548	ENSSSCG00000005965	MYC	chr4	28.3306	27.7612	44.6674	Down
ENSSSCT00000019534	ENSSSCG00000017950	TP53	chr12	57.7784	56.1466	89.0769	Down
ENSSSCT00000008861	ENSSSCG00000008088	IL1B1	chr3	0.556422	0.471694	3.69107	Down
ENSSSCT00000014068	ENSSSCG00000012871	FGF19	chr2	3.07843	1.86141	10.3937	Down
ENSSSCT00000005290	ENSSSCG00000004791	RASGRP1	chr1	30.1798	28.8263	51.557	Down
ENSSSCT00000003320	ENSSSCG00000002989	AKT2	chr6	6.50241	8.61669	17.1493	Down
ENSSSCT00000017958	ENSSSCG00000016494	BRAF	chr18	13.8705	13.6419	26.888	Down
ENSSSCT00000011540	ENSSSCG00000010548	CHUK	chr14	14.6343	12.8828	25.4883	Down
ENSSSCT00000012903	ENSSSCG00000011791	MAP3K13	chr13	3.88342	4.13007	6.05921	Down
ENSSSCT00000011042	ENSSSCG00000010081	MAPK1	chr14	26.7106	17.6584	92.3744	Down
ENSSSCT00000027425	ENSSSCG00000011743	MECOM	chr13	3.93771	4.09804	7.1116	Down
ENSSSCT00000035014	ENSSSCG00000014878	PAK1	chr9	24.4613	18.9034	46.5973	Down
ENSSSCT00000035374	ENSSSCG00000010301	PPP3CB	chr14	9.45583	7.1105	17.1076	Down
ENSSSCT00000036028	ENSSSCG00000012163	RPS6KA3	chrX	9.17022	11.2079	19.51	Down
ENSSSCT00000035439	ENSSSCG00000030957	NFKB1	chr8	168.162	48.412	278.469	Down