Research Article

Role of SNPs in the Biogenesis of Mature miRNAs

Table 1

Example of the SNP information. The format definition refers to the VCF specification; the parameters were listed as follows. Chrom: chromosome; POS: position; ID: identifier; REF: reference base(s); ALT: alternate base(s); QUAL: quality; FILTER: filter status; AN: total number of alleles in called genotypes; AC: allele count in genotypes; AF: allele frequency for each ALT allele in the same order; AN: total number of alleles in called genotypes; NS: number of samples with data; DP: read depth at this position for this sample (integer); AA: ancestral allele; VT: variation type.

TableParameterTableParameter

Chrom1AC1
POS55,285AF0.000199681
IDrs532608387AN5008
REFTNS2504
ALTCDP18,296
QUAL100AAt
FILTERPASSVTSNP