Research Article

Identification of Macrophage Polarization-Related Genes as Biomarkers of Chronic Obstructive Pulmonary Disease Based on Bioinformatics Analyses

Table 1

The results of GO functional annotation and KEGG pathways for the 25 candidate genes.

IDBiological processKEGG pathway

CBR3GO:0042376 ~ phylloquinone catabolic process, GO:0050890 ~ cognition, GO:0055114 ~ oxidation-reduction processhsa00590: arachidonic acid metabolism, hsa00980: metabolism of xenobiotics by cytochrome P450, hsa01100: metabolic pathways
FZD6GO:0001736 ~ establishment of planar polarity, GO:0001843 ~ neural tube closure, GO:0001942 ~ hair follicle development, GO:0007186 ~ G-protein coupled receptor signaling pathway, GO:0007223 ~ Wnt signaling pathway, calcium modulating pathway, GO:0007275 ~ multicellular organism development, GO:0030168 ~ platelet activation, GO:0033278 ~ cell proliferation in midbrain, GO:0035567 ~ non-canonical Wnt signaling pathway, GO:0035880 ~ embryonic nail plate morphogenesis, GO:0042472 ~ inner ear morphogenesis, GO:0043433 ~ negative regulation of sequence-specific DNA binding transcription factor activity, GO:0060071 ~ Wnt signaling pathway, planar cell polarity pathway, GO:0090090 ~ negative regulation of canonical Wnt signaling pathway, GO:1904693 ~ midbrain morphogenesishsa04310: Wnt signaling pathway, hsa04390: Hippo signaling pathway, hsa04550: signaling pathways regulating pluripotency of stem cells, hsa04916: melanogenesis, hsa05166:HTLV-I infection, hsa05200: pathways in cancer, hsa05205: proteoglycans in cancer, hsa05217: basal cell carcinoma
NEFLGO:0000165 ~ MAPK cascade, GO:0000226 ~ microtubule cytoskeleton organization, GO:0008089 ~ anterograde axonal transport, GO:0008090 ~ retrograde axonal transport, GO:0009636 ~ response to toxic substance, GO:0014012 ~ peripheral nervous system axon regeneration, GO:0019896 ~ axonal transport of mitochondrion, GO:0021510 ~ spinal cord development, GO:0021766 ~ hippocampus development, GO:0021987 ~ cerebral cortex development, GO:0031133 ~ regulation of axon diameter, GO:0033693 ~ neurofilament bundle assembly, GO:0040011 ~ locomotion, GO:0043434 ~ response to peptide hormone, GO:0043524 ~ negative regulation of neuron apoptotic process, GO:0043547 ~ positive regulation of GTPase activity, GO:0045105 ~ intermediate filament polymerization or depolymerization, GO:0045109 ~ intermediate filament organization, GO:0048812 ~ neuron projection morphogenesis, GO:0050772 ~ positive regulation of axonogenesis, GO:0050885 ~ neuromuscular process controlling balance, GO:0051258 ~ protein polymerization, GO:0051412 ~ response to corticosterone, GO:0061564 ~ axon development, GO:1903935 ~ response to sodium arsenite, GO:1903937 ~ response to acrylamidehsa05014: amyotrophic lateral sclerosis (ALS),
ZNF676GO:0006351 ~ transcription, DNA-templated, GO:0006355 ~ regulation of transcription, DNA-templated
PROX2GO:0000122 ~ negative regulation of transcription from RNA polymerase II promoter, GO:0006351 ~ transcription, DNA-templated, GO:0030182 ~ neuron differentiation, GO:0045944 ~ positive regulation of transcription from RNA polymerase II promoter, GO:0055007 ~ cardiac muscle cell differentiation
HMMRGO:0000086 ~ G2/M transition of mitotic cell cycle, GO:0030214 ~ hyaluronan catabolic processhsa04512: ECM-receptor interaction
GEMGO:0006955 ~ immune response, GO:0007067 ~ mitotic nuclear division, GO:0007165 ~ signal transduction, GO:0007166 ~ cell surface receptor signaling pathway, GO:0007264 ~ small GTPase mediated signal transduction, GO:0051276 ~ chromosome organization, GO:0051310 ~ metaphase plate congression
HESX1GO:0006351 ~ transcription, DNA-templated, GO:0007420 ~ brain development,GO:0030916 ~ otic vesicle formation, GO:0043584 ~ nose development, GO:0045892 ~ negative regulation of transcription, DNA-templated, GO:0048853 ~ forebrain morphogenesis,hsa04550: signaling pathways regulating pluripotency of stem cells
PRDM6GO:0006351 ~ transcription, DNA-templated, GO:0022008 ~ neurogenesis, GO:0034968 ~ histone lysine methylation, GO:0045892 ~ negative regulation of transcription, DNA-templated, GO:0051151 ~ negative regulation of smooth muscle cell differentiation
RUNDC3B
S100BGO:0007409 ~ axonogenesis, GO:0007417 ~ central nervous system development, GO:0007611 ~ learning or memory, GO:0007613 ~ memory, GO:0008283 ~ cell proliferation, GO:0008284 ~ positive regulation of cell proliferation, GO:0008360 ~ regulation of cell shape, GO:0043065 ~ positive regulation of apoptotic process, GO:0043123 ~ positive regulation of I-kappaB kinase/NF-kappaB signaling, GO:0045087 ~ innate immune response, GO:0048168 ~ regulation of neuronal synaptic plasticity, GO:0048708 ~ astrocyte differentiation, GO:0051384 ~ response to glucocorticoid, GO:0051597 ~ response to methylmercury, GO:0060291 ~ long-term synaptic potentiation, GO:0071456 ~ cellular response to hypoxia, GO:2001015 ~ negative regulation of skeletal muscle cell differentiation
CENPSGO:0000712 ~ resolution of meiotic recombination intermediates, GO:0006281 ~ DNA repair, GO:0006312 ~ mitotic recombination, GO:0006974 ~ cellular response to DNA damage stimulus, GO:0007062 ~ sister chromatid cohesion, GO:0007067 ~ mitotic nuclear division, GO:0031297 ~ replication fork processing, GO:0031398 ~ positive regulation of protein ubiquitination, GO:0034080 ~ CENP-A containing nucleosome assembly, GO:0036297 ~ interstrand cross-link repair, GO:0051301 ~ cell division, GO:0051382 ~ kinetochore assemblyhsa03460: Fanconi anemia pathway
C10orf105
GZMAGO:0006915 ~ apoptotic process, GO:0006955 ~ immune response, GO:0019835 ~ cytolysis, GO:0032078 ~ negative regulation of endodeoxyribonuclease activity, GO:0043065 ~ positive regulation of apoptotic process, GO:0043392 ~ negative regulation of DNA binding, GO:0051354 ~ negative regulation of oxidoreductase activity, GO:0051603 ~ proteolysis involved in cellular protein catabolic processhsa04080: neuroactive ligand-receptor interaction
NEBLGO:0071691 ~ cardiac muscle thin filament assembly
RNF43GO:0016055 ~ Wnt signaling pathway, GO:0016567 ~ protein ubiquitination, GO:0030178 ~ negative regulation of Wnt signaling pathway, GO:0038018 ~ Wnt receptor catabolic process, GO:0042787 ~ protein ubiquitination involved in ubiquitin-dependent protein catabolic process, GO:0072089 ~ stem cell proliferation,
SPINK2GO:0002176 ~ male germ cell proliferation, GO:0007286 ~ spermatid development, GO:0009566 ~ fertilization, GO:0043065 ~ positive regulation of apoptotic process, GO:0060046 ~ regulation of acrosome reaction, GO:0072520 ~ seminiferous tubule development, GO:1900004 ~ negative regulation of serine-type endopeptidase activity
UTS2GO:0001666 ~ response to hypoxia, GO:0003105 ~ negative regulation of glomerular filtration, GO:0006936 ~ muscle contraction, GO:0007204 ~ positive regulation of cytosolic calcium ion concentration, GO:0007268 ~ chemical synaptic transmission, GO:0008217 ~ regulation of blood pressure, GO:0010459 ~ negative regulation of heart rate, GO:0010460 ~ positive regulation of heart rate, GO:0010763 ~ positive regulation of fibroblast migration, GO:0010841 ~ positive regulation of circadian sleep/wake cycle, wakefulness, GO:0032224 ~ positive regulation of synaptic transmission, cholinergic, GO:0032967 ~ positive regulation of collagen biosynthetic process, GO:0033574 ~ response to testosterone, GO:0035811 ~ negative regulation of urine volume, GO:0035814 ~ negative regulation of renal sodium excretion, GO:0042312 ~ regulation of vasodilation, GO:0042493 ~ response to drug, GO:0045597 ~ positive regulation of cell differentiation, GO:0045766 ~ positive regulation of angiogenesis,GO:0045776 ~ negative regulation of blood pressure, GO:0045777 ~ positive regulation of blood pressure, GO:0045909 ~ positive regulation of vasodilation, GO:0046005 ~ positive regulation of circadian sleep/wake cycle, REM sleep,GO:0046676 ~ negative regulation of insulin secretion,GO:0048146 ~ positive regulation of fibroblast proliferation,