Research Article
[Retracted] Identification of Molecular Biomarkers and Key Pathways for Esophageal Carcinoma (EsC): A Bioinformatics Approach
Table 5
Pathway enrichment analysis of (a) upregulated and (b) downregulated DEGs using DAVID functional tools.
| Pathway term | Benjamini | value | Source |
| (A) Upregulated | | | | Protein export | 0.169923 | 9.40E-04 | KEGG | Axon guidance | 0.284819 | 0.00338 | KEGG | RHO GTPases Activate Formins | 0.959243 | 0.007813 | REACTOME | HATs acetylate histones | 0.882682 | 0.010449 | REACTOME | Sphingolipid metabolism | 0.583473 | 0.013182 | KEGG | Pathogenic Escherichia coli infection | 0.580496 | 0.017396 | KEGG | Golgi associated vesicle biogenesis | 0.975818 | 0.026998 | REACTOME | ErbB signaling pathway | 0.671562 | 0.027725 | KEGG | Sphingolipid signaling pathway | 0.637004 | 0.030241 | KEGG | XBP1(S) activates chaperone genes | 0.956916 | 0.030359 | REACTOME | Lysosome | 0.593513 | 0.031324 | KEGG | The information-processing pathway at the IFN-beta enhancer | 0.978374 | 0.034876 | BIOCARTA | Activation of RAC1 | 0.961151 | 0.039023 | REACTOME | Signaling of hepatocyte growth factor receptor | 0.890962 | 0.040208 | BIOCARTA | Epithelial cell signaling in helicobacter pylori infection | 0.654812 | 0.042066 | KEGG | (B) Downregulated | | | | L13a-mediated translational silencing of ceruloplasmin expression | 3.71E-07 | 4.17E-10 | REACTOME | Formation of a pool of free 40S subunits | 4.51E-07 | 5.06E-10 | REACTOME | GTP hydrolysis and joining of the 60S ribosomal subunit | 4.84E-07 | 5.43E-10 | REACTOME | Ribosome | 3.48E-07 | 1.26E-09 | KEGG | Peptide chain elongation | 4.55E-06 | 5.11E-09 | REACTOME | Selenocysteine synthesis | 1.04E-05 | 1.17E-08 | REACTOME | Eukaryotic translation termination | 1.37E-05 | 1.53E-08 | REACTOME | Viral mRNA translation | 1.99E-05 | 2.24E-08 | REACTOME | Nonsense mediated decay (NMD) independent of the exon junction complex (EJC) | 2.30E-05 | 2.58E-08 | REACTOME | SRP-dependent cotranslational protein targeting to membrane | 3.08E-04 | 3.45E-07 | REACTOME | Nonsense mediated decay (NMD) enhanced by the exon junction complex (EJC) | 3.78E-04 | 4.24E-07 | REACTOME | Formation of the ternary complex, and subsequently, the 43S complex | 0.008265 | 9.31E-06 | REACTOME | Ribosomal scanning and start codon recognition | 0.012429 | 1.40E-05 | REACTOME | Translation initiation complex formation | 0.012429 | 1.40E-05 | REACTOME | Chemokine | 0.001886 | 3.85E-05 | BBID |
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