BioMed Research International

Systems Biology Approaches to Mining High Throughput Biological Data


Publishing date
12 Jun 2015
Status
Published
Submission deadline
23 Jan 2015

Lead Editor
Guest Editors

1University of Saskatchewan, Saskatoon, Canada

2Central South University, Changsha, China

3Nankai University, Tianjin, China

4Clemson University, Clemson, USA


Systems Biology Approaches to Mining High Throughput Biological Data

Description

With advances in high throughput measurement techniques, large-scale biological data have been and will continuously be produced, for example, gene expression data, protein-protein interaction (PPI) data, tandem mass spectra data, micro-RNA expression data, lncRNA expression data, biomolecule-disease association data, and so on. Such data contain insightful information for understanding the mechanism of molecular biological systems and have proved useful in diagnosis, treatment, and drug design for genetically caused diseases or disorders.

We invite authors to contribute original research articles which develop or improve systems biology approaches to mining high throughput biological data to this special issue.

Potential topics include, but are not limited to:

  • Integrating expression data with bionetwork data
  • Essential protein identification
  • Predicting protein complex and functional modules
  • Drug target identifications
  • Biomarker discovery
  • Construction, modelling, and analysis of bionetworks
  • Mining OMICS data (transcriptome, RNA binding, genomic, proteome, and various protein modifications)

Articles

  • Special Issue
  • - Volume 2015
  • - Article ID 504362
  • - Editorial

Systems Biology Approaches to Mining High Throughput Biological Data

Fang-Xiang Wu | Min Li | ... | Feng Luo
  • Special Issue
  • - Volume 2015
  • - Article ID 789516
  • - Research Article

Differential Expression Analysis in RNA-Seq by a Naive Bayes Classifier with Local Normalization

Yongchao Dou | Xiaomei Guo | ... | Chi Zhang
  • Special Issue
  • - Volume 2015
  • - Article ID 121575
  • - Research Article

Gene Signature of Human Oral Mucosa Fibroblasts: Comparison with Dermal Fibroblasts and Induced Pluripotent Stem Cells

Keiko Miyoshi | Taigo Horiguchi | ... | Takafumi Noma
  • Special Issue
  • - Volume 2015
  • - Article ID 678764
  • - Research Article

AcconPred: Predicting Solvent Accessibility and Contact Number Simultaneously by a Multitask Learning Framework under the Conditional Neural Fields Model

Jianzhu Ma | Sheng Wang
  • Special Issue
  • - Volume 2015
  • - Article ID 751646
  • - Research Article

Improving Classification of Protein Interaction Articles Using Context Similarity-Based Feature Selection

Yifei Chen | Yuxing Sun | Bing-Qing Han
  • Special Issue
  • - Volume 2015
  • - Article ID 918954
  • - Research Article

-Profiles: A Nonlinear Clustering Method for Pattern Detection in High Dimensional Data

Kai Wang | Qing Zhao | ... | Tianwei Yu
  • Special Issue
  • - Volume 2015
  • - Article ID 185179
  • - Research Article

Improving the Mapping of Smith-Waterman Sequence Database Searches onto CUDA-Enabled GPUs

Liang-Tsung Huang | Chao-Chin Wu | ... | Yun-Ju Li
  • Special Issue
  • - Volume 2015
  • - Article ID 836929
  • - Research Article

Module Based Differential Coexpression Analysis Method for Type 2 Diabetes

Lin Yuan | Chun-Hou Zheng | ... | De-Shuang Huang
  • Special Issue
  • - Volume 2015
  • - Article ID 213750
  • - Research Article

ProSim: A Method for Prioritizing Disease Genes Based on Protein Proximity and Disease Similarity

Gamage Upeksha Ganegoda | Yu Sheng | Jianxin Wang
  • Special Issue
  • - Volume 2015
  • - Article ID 731938
  • - Research Article

Similarities in Gene Expression Profiles during In Vitro Aging of Primary Human Embryonic Lung and Foreskin Fibroblasts

Shiva Marthandan | Steffen Priebe | ... | Stephan Diekmann
BioMed Research International
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Acceptance rate8%
Submission to final decision110 days
Acceptance to publication24 days
CiteScore5.300
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