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Biochemistry Research International
Volume 2016, Article ID 4360285, 13 pages
Research Article

A Bioinformatics Analysis Reveals a Group of MocR Bacterial Transcriptional Regulators Linked to a Family of Genes Coding for Membrane Proteins

1Dipartimento di Scienze Biochimiche, Sapienza Università di Roma, 00185 Roma, Italy
2Istituto di Biologia e Patologia Molecolari, Consiglio Nazionale delle Ricerche, 00185 Roma, Italy

Received 27 November 2015; Accepted 26 May 2016

Academic Editor: Gary A. Lorigan

Copyright © 2016 Teresa Milano et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Supplementary Material

The Supplementary Information contains data which could not be included in the main text because of their size. In particular: Sequence alignments among YczR and non-YczR wHTH and AAT domains; the alignments contains 254 and 281 sequences with average length of 67 and 358 residues, respectively. The alignments can only be visualized on the computer screen using a PDF reader program. The figures display the conserved positions and the position characteristic of the YczR subset compared to those of the non-YczR set; A stereo picture of the AAT domain of a homology model of a YczR displaying the predicted specificity-determining positions (SDP); A table listing the non-YczR regulators taken from the RegPrecise data bank; A table listing the YczR regulators found through the SynTax analysis; A table listing the putative organisms containing the YczR regulons used to derive the DNA binding motif. More details are described in the captions to the figures included in the Supplementary Information file.

  1. Supplementary Material