Research Article
Genomic Analysis of a Serotype 5 Streptococcus pneumoniae Outbreak in British Columbia, Canada, 2005–2009
Table 2
SNVs between BCSP1 and BCSP2.
| | Position | 70585 reference base | BCSP1 base | BCSP2 base | Qualifier | Gene product | Synonymous | Amino acid change |
| | 384518 | T | A | T | SP70585_0437 | Hypothetical protein | No | | | 425383 | C | C | T | SP70585_0473 | Helicase, RecD/TraA family | No | | | 457503 | C | C | T | 〈Noncoding〉 | Not applicable | — | — | | 568204 | C | C | T | 〈Noncoding〉 | Not applicable | — | — | | 923459 | T | T | G | SP70585_1004 | Dihydroorotate dehydrogenase 1B | No | | | 936681 | A | A | T | SP70585_101 | Competence protein | No | | | 1389846 | C | A | — | SP70585_1509 | Pyridoxal biosynthesis lyase PdxS | No | | | 1675901 | G | G | A | SP70585_1804 | Preprotein translocase subunit SecY | No | | 2044455
| T
| G
| T
| SP70585_2234
| beta-N-Acetylglucosaminidase/beta-glucosidase (3-beta-N-acetyl-D-glucosaminidase/beta-D-glucosidase) (Nag3) | No | | | 2104679 | T | T | G | SP70585_2289 | alpha-L-Fucosidase | No | |
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SNV is located in the genomic island.
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