Research Article

De Novo Sequencing of a Sparassis latifolia Genome and Its Associated Comparative Analyses

Table 1

Summary statistics of the S. latifolia genome.

Sequence and assemblyStatistics

Scaffold number472
Scaffold length (Mb)48.13
Scaffold N50 (Kb)640.83
GC content (%)51.43
Length of classified repeats (%)5.19 Mb (10.79%)
Number of predicted gene models12,471
Average transcript length (bp)1216
Average number of exons per gene4.9
Average exon size (bp)246
Average intron size (bp)84
Number of tRNA genes115
Number of rRNA genes21
Number of miRNA genes72

Gene predictionNumber

NR annotation11,106
KEGG annotation3445
KOG annotation5691
COG annotation3919
GO annotation3197
Pfam annotation6821
Swissport annotation7012
TrEMBL annotation11,026